PMC:7781431 / 30047-34443
Annnotations
LitCovid-PubTator
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syncytial virus, human immunodeficiency virus, and hepatitis C virus\nRespiratory syncytial virus (RSV), also known as human respiratory cell fusion virus (HRSV) and human orthopneumovirus, is a virus that causes respiratory infections in which infected mucosal cells fuse to form a syncytium (Schweitzer and Justice 2020). It is the leading cause of lower respiratory tract infections and hospital visits in infancy and childhood (Read and Bosco 2020). RSV infection results in bronchiolitis, which is classically caused by activated macrophages and eventually resolved by alternatively activated macrophages (Shirey et al. 2010). The promotion of these two alternative macrophage fates appears to be related to RSV-induced COX-2 and LXA4 and RvE1-mediated protective measures (Fig. 4) (Richardson et al. 2005; Shirey et al. 2014). Also, although it does not directly act on the virus, RvD1 inhibits inflammatory signal transduction by polyinosinic-polycytidylic acid, an analogue of RNAs derived from respiratory viruses such as RSV, and the action of RvD1 is mediated by FPR2/ALX and GPR32 (Hsiao et al. 2014). These reports suggest the critical role of SPMs and lipid mediator class shift in the host’s response to RSV in the initial control and final infection clearance.\nHuman immunodeficiency virus (HIV) is a lentivirus (a subgroup of retroviruses) and are classified into two based on the genetic characteristics and viral antigen, HIV-1 and HIV-2. HIV infection may progress to acquired immunodeficiency syndrome (AIDS), a progressive failure of the immune system. Over time, AIDS causes life-threatening opportunistic infections and a condition in which cancer thrives (Douek et al. 2009; Powell et al. 2016).\nWhen co-cultured with HIV-1 infected mononuclear cells and human glial cells (astrocytoma, glial and primary human astrocyte), tumour necrosis factor alpha (TNF-α) and interleukin-1β are produced, and large amounts of LTB4, LTD4, LXA4, and PAF, were also found in media from this co-culture (Fig. 4) (Genis et al. 1992). So far, this is the only in vitro study to prove, that LXs are produced in direct response to viral infection. However, the role of LXs in this infection model has not been investigated. Synthetic peptides derived from human immunodeficiency virus type 1 gp120 activate the 7-transmembrane GPCR FPR2/ALX, down-regulating the expression and function of chemokine receptors CCR5 and CXCR4 in monocytes (Deng et al. 1999).\nFPR2/ALX acts as an efficient core receptor for the primary isolate of HIV (Shimizu et al. 2008). Viral entries through the alternative core receptors (CoR) CCR3 and FPR2/ALX depend on the HIV type 1 subtype. Viruses pseudotyped with subtype A and C Env proteins use the recently described alternative CoR FPR2 more efficiently than CCR3 (Nedellec et al. 2009). ChemR23 also acts as a CoR for HIV. At this time, HIV-1 and HIV-2 appear to use the N-terminus and the second extracellular loop of ChemR23 during infection (Martensson et al. 2006). As mentioned above, research is needed to determine the role of SPMs that act as ligands for FPR2 and ChemR23 in HIV infection.\nHepatitis C virus (HCV) is a positive-sense single-stranded RNA virus of the family Flaviviridae with a small (55–65 nm size) envelope (Lee et al. 2017). The HCV is the cause of hepatitis C and some cancers such as liver cancer (hepatocellular carcinoma, abbreviated HCC) and lymphoma in humans (Ferri et al. 2015; Rusyn and Lemon 2014). To date, there appears to be no report on the effectiveness of SPMs against HCV. However, HCV peptide (C5A), an amphiphilic α-helix peptide of HCV, is an activator of the N-formyl peptide receptor in human phagocytes (Lin et al. 2011). This suggests the possibility of interaction between RvD1 and LXA4, FPR families, and HCV. Vitamin D metabolites inhibit HCV and upregulate GPR37 gene expression, which induces cellular autophagy (Gutierrez et al. 2014). PD1 was recently proposed as a new ligand for GPR37, and some studies suggest a possible relationship between PD1 and HCV (Fig. 4). SAA also has antiviral effects against HCV, however, it induces chronic inflammation through FPR2/ALX, causing liver damage (Abouelasrar Salama et al. 2019). Although research has not been conducted yet, RvD1 and LXA4, which inhibit the action of SAA, are likely to suppress liver damage caused by SAA during HCV infection."}
LitCovid-PD-HP
{"project":"LitCovid-PD-HP","denotations":[{"id":"T25","span":{"begin":35,"end":51},"obj":"Phenotype"},{"id":"T26","span":{"begin":63,"end":72},"obj":"Phenotype"},{"id":"T27","span":{"begin":224,"end":246},"obj":"Phenotype"},{"id":"T28","span":{"begin":362,"end":396},"obj":"Phenotype"},{"id":"T29","span":{"begin":490,"end":503},"obj":"Phenotype"},{"id":"T30","span":{"begin":1294,"end":1310},"obj":"Phenotype"},{"id":"T31","span":{"begin":1508,"end":1524},"obj":"Phenotype"},{"id":"T32","span":{"begin":1626,"end":1650},"obj":"Phenotype"},{"id":"T33","span":{"begin":1676,"end":1682},"obj":"Phenotype"},{"id":"T34","span":{"begin":1810,"end":1821},"obj":"Phenotype"},{"id":"T35","span":{"begin":1859,"end":1865},"obj":"Phenotype"},{"id":"T36","span":{"begin":2278,"end":2294},"obj":"Phenotype"},{"id":"T37","span":{"begin":3146,"end":3155},"obj":"Phenotype"},{"id":"T38","span":{"begin":3324,"end":3333},"obj":"Phenotype"},{"id":"T39","span":{"begin":3361,"end":3373},"obj":"Phenotype"},{"id":"T40","span":{"begin":3375,"end":3399},"obj":"Phenotype"},{"id":"T41","span":{"begin":3422,"end":3430},"obj":"Phenotype"}],"attributes":[{"id":"A25","pred":"hp_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/HP_0002721"},{"id":"A26","pred":"hp_id","subj":"T26","obj":"http://purl.obolibrary.org/obo/HP_0012115"},{"id":"A27","pred":"hp_id","subj":"T27","obj":"http://purl.obolibrary.org/obo/HP_0011947"},{"id":"A28","pred":"hp_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/HP_0002783"},{"id":"A29","pred":"hp_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/HP_0011950"},{"id":"A30","pred":"hp_id","subj":"T30","obj":"http://purl.obolibrary.org/obo/HP_0002721"},{"id":"A31","pred":"hp_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/HP_0002721"},{"id":"A32","pred":"hp_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/HP_0031690"},{"id":"A33","pred":"hp_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"id":"A34","pred":"hp_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/HP_0009592"},{"id":"A35","pred":"hp_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/HP_0002664"},{"id":"A36","pred":"hp_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/HP_0002721"},{"id":"A37","pred":"hp_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/HP_0012115"},{"id":"A38","pred":"hp_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/HP_0012115"},{"id":"A39","pred":"hp_id","subj":"T39","obj":"http://purl.obolibrary.org/obo/HP_0002896"},{"id":"A40","pred":"hp_id","subj":"T40","obj":"http://purl.obolibrary.org/obo/HP_0001402"},{"id":"A41","pred":"hp_id","subj":"T41","obj":"http://purl.obolibrary.org/obo/HP_0002665"}],"text":"Respiratory syncytial virus, human immunodeficiency virus, and hepatitis C virus\nRespiratory syncytial virus (RSV), also known as human respiratory cell fusion virus (HRSV) and human orthopneumovirus, is a virus that causes respiratory infections in which infected mucosal cells fuse to form a syncytium (Schweitzer and Justice 2020). It is the leading cause of lower respiratory tract infections and hospital visits in infancy and childhood (Read and Bosco 2020). RSV infection results in bronchiolitis, which is classically caused by activated macrophages and eventually resolved by alternatively activated macrophages (Shirey et al. 2010). The promotion of these two alternative macrophage fates appears to be related to RSV-induced COX-2 and LXA4 and RvE1-mediated protective measures (Fig. 4) (Richardson et al. 2005; Shirey et al. 2014). Also, although it does not directly act on the virus, RvD1 inhibits inflammatory signal transduction by polyinosinic-polycytidylic acid, an analogue of RNAs derived from respiratory viruses such as RSV, and the action of RvD1 is mediated by FPR2/ALX and GPR32 (Hsiao et al. 2014). These reports suggest the critical role of SPMs and lipid mediator class shift in the host’s response to RSV in the initial control and final infection clearance.\nHuman immunodeficiency virus (HIV) is a lentivirus (a subgroup of retroviruses) and are classified into two based on the genetic characteristics and viral antigen, HIV-1 and HIV-2. HIV infection may progress to acquired immunodeficiency syndrome (AIDS), a progressive failure of the immune system. Over time, AIDS causes life-threatening opportunistic infections and a condition in which cancer thrives (Douek et al. 2009; Powell et al. 2016).\nWhen co-cultured with HIV-1 infected mononuclear cells and human glial cells (astrocytoma, glial and primary human astrocyte), tumour necrosis factor alpha (TNF-α) and interleukin-1β are produced, and large amounts of LTB4, LTD4, LXA4, and PAF, were also found in media from this co-culture (Fig. 4) (Genis et al. 1992). So far, this is the only in vitro study to prove, that LXs are produced in direct response to viral infection. However, the role of LXs in this infection model has not been investigated. Synthetic peptides derived from human immunodeficiency virus type 1 gp120 activate the 7-transmembrane GPCR FPR2/ALX, down-regulating the expression and function of chemokine receptors CCR5 and CXCR4 in monocytes (Deng et al. 1999).\nFPR2/ALX acts as an efficient core receptor for the primary isolate of HIV (Shimizu et al. 2008). Viral entries through the alternative core receptors (CoR) CCR3 and FPR2/ALX depend on the HIV type 1 subtype. Viruses pseudotyped with subtype A and C Env proteins use the recently described alternative CoR FPR2 more efficiently than CCR3 (Nedellec et al. 2009). ChemR23 also acts as a CoR for HIV. At this time, HIV-1 and HIV-2 appear to use the N-terminus and the second extracellular loop of ChemR23 during infection (Martensson et al. 2006). As mentioned above, research is needed to determine the role of SPMs that act as ligands for FPR2 and ChemR23 in HIV infection.\nHepatitis C virus (HCV) is a positive-sense single-stranded RNA virus of the family Flaviviridae with a small (55–65 nm size) envelope (Lee et al. 2017). The HCV is the cause of hepatitis C and some cancers such as liver cancer (hepatocellular carcinoma, abbreviated HCC) and lymphoma in humans (Ferri et al. 2015; Rusyn and Lemon 2014). To date, there appears to be no report on the effectiveness of SPMs against HCV. However, HCV peptide (C5A), an amphiphilic α-helix peptide of HCV, is an activator of the N-formyl peptide receptor in human phagocytes (Lin et al. 2011). This suggests the possibility of interaction between RvD1 and LXA4, FPR families, and HCV. Vitamin D metabolites inhibit HCV and upregulate GPR37 gene expression, which induces cellular autophagy (Gutierrez et al. 2014). PD1 was recently proposed as a new ligand for GPR37, and some studies suggest a possible relationship between PD1 and HCV (Fig. 4). SAA also has antiviral effects against HCV, however, it induces chronic inflammation through FPR2/ALX, causing liver damage (Abouelasrar Salama et al. 2019). Although research has not been conducted yet, RvD1 and LXA4, which inhibit the action of SAA, are likely to suppress liver damage caused by SAA during HCV infection."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T299","span":{"begin":0,"end":80},"obj":"Sentence"},{"id":"T300","span":{"begin":81,"end":334},"obj":"Sentence"},{"id":"T301","span":{"begin":335,"end":464},"obj":"Sentence"},{"id":"T302","span":{"begin":465,"end":635},"obj":"Sentence"},{"id":"T303","span":{"begin":636,"end":642},"obj":"Sentence"},{"id":"T304","span":{"begin":643,"end":816},"obj":"Sentence"},{"id":"T305","span":{"begin":817,"end":836},"obj":"Sentence"},{"id":"T306","span":{"begin":837,"end":843},"obj":"Sentence"},{"id":"T307","span":{"begin":844,"end":1117},"obj":"Sentence"},{"id":"T308","span":{"begin":1118,"end":1124},"obj":"Sentence"},{"id":"T309","span":{"begin":1125,"end":1287},"obj":"Sentence"},{"id":"T310","span":{"begin":1288,"end":1468},"obj":"Sentence"},{"id":"T311","span":{"begin":1469,"end":1585},"obj":"Sentence"},{"id":"T312","span":{"begin":1586,"end":1704},"obj":"Sentence"},{"id":"T313","span":{"begin":1705,"end":1724},"obj":"Sentence"},{"id":"T314","span":{"begin":1725,"end":1731},"obj":"Sentence"},{"id":"T315","span":{"begin":1732,"end":2045},"obj":"Sentence"},{"id":"T316","span":{"begin":2046,"end":2052},"obj":"Sentence"},{"id":"T317","span":{"begin":2053,"end":2163},"obj":"Sentence"},{"id":"T318","span":{"begin":2164,"end":2239},"obj":"Sentence"},{"id":"T319","span":{"begin":2240,"end":2465},"obj":"Sentence"},{"id":"T320","span":{"begin":2466,"end":2472},"obj":"Sentence"},{"id":"T321","span":{"begin":2473,"end":2563},"obj":"Sentence"},{"id":"T322","span":{"begin":2564,"end":2570},"obj":"Sentence"},{"id":"T323","span":{"begin":2571,"end":2681},"obj":"Sentence"},{"id":"T324","span":{"begin":2682,"end":2827},"obj":"Sentence"},{"id":"T325","span":{"begin":2828,"end":2834},"obj":"Sentence"},{"id":"T326","span":{"begin":2835,"end":2870},"obj":"Sentence"},{"id":"T327","span":{"begin":2871,"end":3010},"obj":"Sentence"},{"id":"T328","span":{"begin":3011,"end":3017},"obj":"Sentence"},{"id":"T329","span":{"begin":3018,"end":3145},"obj":"Sentence"},{"id":"T330","span":{"begin":3146,"end":3292},"obj":"Sentence"},{"id":"T331","span":{"begin":3293,"end":3299},"obj":"Sentence"},{"id":"T332","span":{"begin":3300,"end":3454},"obj":"Sentence"},{"id":"T333","span":{"begin":3455,"end":3483},"obj":"Sentence"},{"id":"T334","span":{"begin":3484,"end":3564},"obj":"Sentence"},{"id":"T335","span":{"begin":3565,"end":3712},"obj":"Sentence"},{"id":"T336","span":{"begin":3713,"end":3719},"obj":"Sentence"},{"id":"T337","span":{"begin":3720,"end":3810},"obj":"Sentence"},{"id":"T338","span":{"begin":3811,"end":3933},"obj":"Sentence"},{"id":"T339","span":{"begin":3934,"end":3940},"obj":"Sentence"},{"id":"T340","span":{"begin":3941,"end":4072},"obj":"Sentence"},{"id":"T341","span":{"begin":4073,"end":4223},"obj":"Sentence"},{"id":"T342","span":{"begin":4224,"end":4230},"obj":"Sentence"},{"id":"T343","span":{"begin":4231,"end":4396},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Respiratory syncytial virus, human immunodeficiency virus, and hepatitis C virus\nRespiratory syncytial virus (RSV), also known as human respiratory cell fusion virus (HRSV) and human orthopneumovirus, is a virus that causes respiratory infections in which infected mucosal cells fuse to form a syncytium (Schweitzer and Justice 2020). It is the leading cause of lower respiratory tract infections and hospital visits in infancy and childhood (Read and Bosco 2020). RSV infection results in bronchiolitis, which is classically caused by activated macrophages and eventually resolved by alternatively activated macrophages (Shirey et al. 2010). The promotion of these two alternative macrophage fates appears to be related to RSV-induced COX-2 and LXA4 and RvE1-mediated protective measures (Fig. 4) (Richardson et al. 2005; Shirey et al. 2014). Also, although it does not directly act on the virus, RvD1 inhibits inflammatory signal transduction by polyinosinic-polycytidylic acid, an analogue of RNAs derived from respiratory viruses such as RSV, and the action of RvD1 is mediated by FPR2/ALX and GPR32 (Hsiao et al. 2014). These reports suggest the critical role of SPMs and lipid mediator class shift in the host’s response to RSV in the initial control and final infection clearance.\nHuman immunodeficiency virus (HIV) is a lentivirus (a subgroup of retroviruses) and are classified into two based on the genetic characteristics and viral antigen, HIV-1 and HIV-2. HIV infection may progress to acquired immunodeficiency syndrome (AIDS), a progressive failure of the immune system. Over time, AIDS causes life-threatening opportunistic infections and a condition in which cancer thrives (Douek et al. 2009; Powell et al. 2016).\nWhen co-cultured with HIV-1 infected mononuclear cells and human glial cells (astrocytoma, glial and primary human astrocyte), tumour necrosis factor alpha (TNF-α) and interleukin-1β are produced, and large amounts of LTB4, LTD4, LXA4, and PAF, were also found in media from this co-culture (Fig. 4) (Genis et al. 1992). So far, this is the only in vitro study to prove, that LXs are produced in direct response to viral infection. However, the role of LXs in this infection model has not been investigated. Synthetic peptides derived from human immunodeficiency virus type 1 gp120 activate the 7-transmembrane GPCR FPR2/ALX, down-regulating the expression and function of chemokine receptors CCR5 and CXCR4 in monocytes (Deng et al. 1999).\nFPR2/ALX acts as an efficient core receptor for the primary isolate of HIV (Shimizu et al. 2008). Viral entries through the alternative core receptors (CoR) CCR3 and FPR2/ALX depend on the HIV type 1 subtype. Viruses pseudotyped with subtype A and C Env proteins use the recently described alternative CoR FPR2 more efficiently than CCR3 (Nedellec et al. 2009). ChemR23 also acts as a CoR for HIV. At this time, HIV-1 and HIV-2 appear to use the N-terminus and the second extracellular loop of ChemR23 during infection (Martensson et al. 2006). As mentioned above, research is needed to determine the role of SPMs that act as ligands for FPR2 and ChemR23 in HIV infection.\nHepatitis C virus (HCV) is a positive-sense single-stranded RNA virus of the family Flaviviridae with a small (55–65 nm size) envelope (Lee et al. 2017). The HCV is the cause of hepatitis C and some cancers such as liver cancer (hepatocellular carcinoma, abbreviated HCC) and lymphoma in humans (Ferri et al. 2015; Rusyn and Lemon 2014). To date, there appears to be no report on the effectiveness of SPMs against HCV. However, HCV peptide (C5A), an amphiphilic α-helix peptide of HCV, is an activator of the N-formyl peptide receptor in human phagocytes (Lin et al. 2011). This suggests the possibility of interaction between RvD1 and LXA4, FPR families, and HCV. Vitamin D metabolites inhibit HCV and upregulate GPR37 gene expression, which induces cellular autophagy (Gutierrez et al. 2014). PD1 was recently proposed as a new ligand for GPR37, and some studies suggest a possible relationship between PD1 and HCV (Fig. 4). SAA also has antiviral effects against HCV, however, it induces chronic inflammation through FPR2/ALX, causing liver damage (Abouelasrar Salama et al. 2019). Although research has not been conducted yet, RvD1 and LXA4, which inhibit the action of SAA, are likely to suppress liver damage caused by SAA during HCV infection."}