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PMC:7755033 / 21031-21583 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
365 48-52 Gene denotes ACE2 Gene:59272
366 137-141 Gene denotes Bank Gene:55024
367 177-180 Gene denotes pdb Gene:5131
368 145-148 Gene denotes PDB Gene:5131
369 42-47 Species denotes human Tax:9606
370 63-71 Species denotes SARS-CoV Tax:694009
371 76-86 Species denotes SARS-CoV-2 Tax:2697049
372 346-354 Chemical denotes hydrogen MESH:D006859
373 429-434 Chemical denotes water MESH:D014867

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T180 0-182 Sentence denotes The available X-ray crystal structures of human ACE2 receptor, SARS-CoV and SARS-CoV-2 protein targets were downloaded from Protein Data Bank in PDB format (http://www.rcsb.org/pdb).
T181 183-284 Sentence denotes Before docking analyses, the protein structures were subjected to refinement and energy minimization.
T182 285-445 Sentence denotes The refinement involved the addition of missing atoms, polar hydrogen atoms and Kollman charges to the residues and removal of crystallographic water-molecules.
T183 446-552 Sentence denotes These structures were visualized in Accelrys Biovia Discovery Studio 2017 R2 (Biovia, San Diego, CA, USA).