PMC:7755033 / 102993-103497 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7755033","sourcedb":"PMC","sourceid":"7755033","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7755033","text":"Figure 12.3. Energy, hydrogen bond analysis and decomposition analysis of SARS-CoV spike glycoprotein (PDB ID: 5WRG) with withanolide B (A) MM/PB(GB)SA result consists of electrostatic energy (ELE), van der Waals contribution (VDW), total gas phase energy (GAS), non-polar and polar contributions to solvation (PBSOL/GBSOL) (B,C) Statistics of hydrogen bonds (D) Energy decompose of protein–ligand complex (Kcal/mol) (E) Graphical representation of decompose result (F) Showing the heatmap of decompose.","divisions":[{"label":"label","span":{"begin":0,"end":12}}],"tracks":[{"project":"LitCovid-PubTator","denotations":[{"id":"1981","span":{"begin":84,"end":89},"obj":"Gene"},{"id":"1982","span":{"begin":104,"end":107},"obj":"Gene"},{"id":"1983","span":{"begin":75,"end":83},"obj":"Species"}],"attributes":[{"id":"A1981","pred":"tao:has_database_id","subj":"1981","obj":"Gene:43740568"},{"id":"A1982","pred":"tao:has_database_id","subj":"1982","obj":"Gene:5131"},{"id":"A1983","pred":"tao:has_database_id","subj":"1983","obj":"Tax:694009"},{"subj":"1981","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1982","pred":"source","obj":"LitCovid-PubTator"},{"subj":"1983","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T13","span":{"begin":413,"end":420},"obj":"Phenotype"}],"attributes":[{"id":"A13","pred":"hp_id","subj":"T13","obj":"http://purl.obolibrary.org/obo/HP_0003764"},{"subj":"T13","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T1062","span":{"begin":0,"end":12},"obj":"Sentence"},{"id":"T1063","span":{"begin":14,"end":111},"obj":"Sentence"},{"id":"T1064","span":{"begin":112,"end":504},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T1062","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1063","pred":"source","obj":"LitCovid-sentences"},{"subj":"T1064","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PubTator","color":"#eccb93","default":true},{"id":"LitCovid-PD-HP","color":"#b193ec"},{"id":"LitCovid-sentences","color":"#93ec97"}]}]}}