
PMC:7650537 / 9623-12674
Annnotations
LitCovid-PD-FMA-UBERON
Id | Subject | Object | Predicate | Lexical cue | fma_id |
---|---|---|---|---|---|
T66 | 29-37 | Body_part | denotes | Antibody | http://purl.org/sig/ont/fma/fma62871 |
T67 | 61-64 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T68 | 91-94 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T69 | 150-153 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T70 | 227-230 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T71 | 316-319 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T72 | 332-334 | Body_part | denotes | AG | http://purl.org/sig/ont/fma/fma61898 |
T73 | 383-386 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T74 | 442-445 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T75 | 468-470 | Body_part | denotes | AG | http://purl.org/sig/ont/fma/fma61898 |
T76 | 524-527 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T77 | 611-619 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
T78 | 777-784 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T79 | 837-844 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T80 | 973-976 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T81 | 1966-1969 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T82 | 2355-2358 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T83 | 2376-2378 | Body_part | denotes | v1 | http://purl.org/sig/ont/fma/fma13444|http://purl.org/sig/ont/fma/fma68614 |
T85 | 2411-2414 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T86 | 2446-2448 | Body_part | denotes | v2 | http://purl.org/sig/ont/fma/fma13443|http://purl.org/sig/ont/fma/fma68615 |
T88 | 2480-2483 | Body_part | denotes | IgG | http://purl.org/sig/ont/fma/fma62872 |
T89 | 2537-2544 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T90 | 2660-2667 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
T91 | 2770-2778 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
Id | Subject | Object | Predicate | Lexical cue | mondo_id |
---|---|---|---|---|---|
T44 | 18-26 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T45 | 50-58 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T46 | 80-88 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T47 | 134-142 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T48 | 218-226 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
T49 | 298-306 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T50 | 372-380 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T51 | 421-429 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T52 | 513-517 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
T53 | 600-608 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T54 | 645-653 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T55 | 952-960 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T56 | 1945-1953 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T57 | 2469-2477 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T58 | 2685-2693 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T59 | 2713-2721 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
T60 | 2814-2822 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T87 | 38-43 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Tests |
T88 | 145-147 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T89 | 446-450 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | Test |
T90 | 620-624 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T91 | 759-764 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
T92 | 877-879 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T93 | 926-928 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T94 | 926-928 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T95 | 977-981 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T96 | 1027-1029 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T97 | 1034-1036 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
T98 | 1034-1036 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
T99 | 1094-1095 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T100 | 1116-1117 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T101 | 1145-1147 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T102 | 1154-1159 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
T103 | 1280-1281 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T104 | 1308-1309 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T105 | 1506-1514 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test was |
T106 | 1555-1556 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T107 | 1805-1806 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T108 | 1807-1813 | http://purl.obolibrary.org/obo/SO_0000418 | denotes | signal |
T109 | 1907-1908 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
T110 | 1925-1927 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
T111 | 2125-2129 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
T112 | 2246-2252 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
T113 | 2552-2557 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
T114 | 2829-2832 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
T115 | 2862-2864 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
T116 | 2886-2887 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
T117 | 2987-2988 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
Id | Subject | Object | Predicate | Lexical cue | chebi_id |
---|---|---|---|---|---|
T44 | 195-198 | Chemical | denotes | EDI | http://purl.obolibrary.org/obo/CHEBI_73491 |
T45 | 332-334 | Chemical | denotes | AG | http://purl.obolibrary.org/obo/CHEBI_27569|http://purl.obolibrary.org/obo/CHEBI_40618|http://purl.obolibrary.org/obo/CHEBI_73757 |
T48 | 468-470 | Chemical | denotes | AG | http://purl.obolibrary.org/obo/CHEBI_27569|http://purl.obolibrary.org/obo/CHEBI_40618|http://purl.obolibrary.org/obo/CHEBI_73757 |
T51 | 741-749 | Chemical | denotes | antigens | http://purl.obolibrary.org/obo/CHEBI_59132 |
T52 | 777-784 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T53 | 837-844 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T54 | 926-928 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T55 | 1018-1026 | Chemical | denotes | antigens | http://purl.obolibrary.org/obo/CHEBI_59132 |
T56 | 1034-1036 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
T57 | 1047-1054 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
T58 | 1118-1132 | Chemical | denotes | nitrocellulose | http://purl.obolibrary.org/obo/CHEBI_53325 |
T59 | 1827-1829 | Chemical | denotes | CO | http://purl.obolibrary.org/obo/CHEBI_17245 |
T60 | 2278-2285 | Chemical | denotes | reagent | http://purl.obolibrary.org/obo/CHEBI_33893 |
T61 | 2296-2300 | Chemical | denotes | urea | http://purl.obolibrary.org/obo/CHEBI_16199 |
T62 | 2537-2544 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T63 | 2637-2645 | Chemical | denotes | antigens | http://purl.obolibrary.org/obo/CHEBI_59132 |
T64 | 2660-2667 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
T65 | 2770-2778 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
T66 | 2865-2872 | Chemical | denotes | antigen | http://purl.obolibrary.org/obo/CHEBI_59132 |
LitCovid-sentences
Id | Subject | Object | Predicate | Lexical cue |
---|---|---|---|---|
T74 | 0-4 | Sentence | denotes | 2.2. |
T75 | 5-43 | Sentence | denotes | Investigated SARS-CoV-2 Antibody Tests |
T76 | 44-724 | Sentence | denotes | Seven SARS-CoV-2 IgG assays (Abbott SARS-CoV-2 IgG, Wiesbaden, Germany; DiaSorin Liaison® SARS-CoV-2 S1/2 IgG, DiaSorin, Dietzenbach, Germany; Epitope EDI™ Novel Coronavirus COVID-19 IgG ELISA Kit, Epitope Diagnostics, San Diego, CA, USA; Euroimmun Anti-SARS-CoV-2 ELISA (IgG), EUROIMMUN AG, Lübeck, Germany; Mikrogen recomWell SARS-CoV-2 IgG, Mikrogen GmbH, Neuried, Germany; SARS-CoV-2 ViraChip® IgG Test, Viramed Biotech AG, Planegg, Germany; and SERION ELISA agile SARS-COV-2 IgG, Institute Virion-Serion GmbH, Würzburg, Germany), as well as one total SARS-CoV-2 antibody test (Roche Elecsys Anti-SARS-CoV-2, Roche Diagnostics, Mannheim, Germany), were included in this study. |
T77 | 725-947 | Sentence | denotes | The recombinant antigens of these tests cover the N protein (Abbott, Epitope, Mikrogen, Roche) and the entire S protein (Virion-Serion), as well as its S1 domain alone (Euroimmun) or together with the S2 domain (DiaSorin). |
T78 | 948-1149 | Sentence | denotes | The SARS-CoV-2 ViraChip® IgG test kit uses the purified viral surface antigens S1 and S2 and the N antigen, which are all presented separately at a defined position on a nitrocellulose film (Table S1). |
T79 | 1150-1491 | Sentence | denotes | All tests were conducted strictly following the recommendations of the manufacturers on an Architect or Alinity machine (Abbott), a Liaison XL (DiaSorin), or a Cobas e 411 (Roche) or, for the assays of Epitope, Euroimmun, Mikrogen Viramed, and Virion-Serion, on the BEP 2000 system (Siemens Healthcare GmbH, Erlangen, Germany), respectively. |
T80 | 1492-1601 | Sentence | denotes | The ViraChip® test was then evaluated automatically by help of a ViraChip® reader and the ViraChip® Software. |
T81 | 1602-1660 | Sentence | denotes | All borderline/gray zone results were counted as positive. |
T82 | 1661-1795 | Sentence | denotes | Furthermore, raw data from seven assays were converted into relative indices according to the decision limits set by the manufacturer. |
T83 | 1796-1929 | Sentence | denotes | Thereby, a signal (S)/cut-off (CO) value of <1 was valued as negative and ≥1 as positive, which corresponds to a previous study [22]. |
T84 | 1930-2073 | Sentence | denotes | Results of the SARS-CoV-2 ViraChip® IgG could not be converted into relative indices and were only given qualitatively as negative or positive. |
T85 | 2074-2213 | Sentence | denotes | The proportion of correctly identified samples per test relative to the chosen reference method was calculated and given as assay accuracy. |
T86 | 2214-2379 | Sentence | denotes | The convalescent sera were also tested with and without avidity reagent (contains urea in denaturating concentrations) in two versions of an IgG line assay (blot v1: |
T87 | 2380-2449 | Sentence | denotes | Mikrogen recomLine Coronavirus IgG (Avidität), prototype and blot v2: |
T88 | 2450-2500 | Sentence | denotes | Mikrogen recomLine SARS-CoV-2 IgG (Avidität)/RUO). |
T89 | 2501-2724 | Sentence | denotes | The first version is based on the N protein of the human coronaviruses (HCoVs) 229E, HKU1, NL63, and OC43, which are used separately as antigens, and on the N protein of the “classic” SARS-CoV from 2002/2003 and SARS-CoV-2. |
T90 | 2725-2885 | Sentence | denotes | The second improved version still uses the N proteins of the aforementioned HCoVs and of SARS-CoV-2 but has been expanded to include the S1 antigen and its RBD. |
T91 | 2886-2941 | Sentence | denotes | A Dynablot Plus system was used to process all samples. |
T92 | 2942-3051 | Sentence | denotes | Blots were then evaluated automatically with a BLOTrix reader and the recomScan software (all from Mikrogen). |
LitCovid-PubTator
Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
---|---|---|---|---|---|
175 | 18-28 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
190 | 1045-1046 | Gene | denotes | N | Gene:43740575 |
191 | 775-776 | Gene | denotes | N | Gene:43740575 |
192 | 134-144 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
193 | 200-217 | Species | denotes | Novel Coronavirus | Tax:2697049 |
194 | 50-60 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
195 | 80-90 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
196 | 298-308 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
197 | 372-382 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
198 | 421-431 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
199 | 513-523 | Species | denotes | SARS-COV-2 | Tax:2697049 |
200 | 600-610 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
201 | 645-655 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
202 | 952-962 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
203 | 218-226 | Disease | denotes | COVID-19 | MESH:C000657245 |
206 | 1815-1816 | Gene | denotes | S | Gene:43740568 |
207 | 1945-1955 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
217 | 2768-2769 | Gene | denotes | N | Gene:43740575 |
218 | 2552-2557 | Species | denotes | human | Tax:9606 |
219 | 2558-2571 | Species | denotes | coronaviruses | Tax:11118 |
220 | 2685-2693 | Species | denotes | SARS-CoV | Tax:694009 |
221 | 2713-2723 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
222 | 2814-2824 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
223 | 2399-2410 | Species | denotes | Coronavirus | Tax:11118 |
224 | 2469-2479 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
225 | 2296-2300 | Chemical | denotes | urea | MESH:D014508 |