PMC:7650537 / 1569-2605
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T14 | 431-447 | Body_part | denotes | ribonucleic acid | http://purl.org/sig/ont/fma/fma67095 |
| T15 | 449-452 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T16 | 454-460 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T17 | 508-516 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T18 | 573-581 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T19 | 601-606 | Body_part | denotes | lipid | http://purl.org/sig/ont/fma/fma67264 |
| T20 | 622-630 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T21 | 900-903 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T22 | 944-951 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T9 | 103-112 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T10 | 222-269 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T11 | 222-255 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T12 | 271-279 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T13 | 356-365 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 90-91 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T9 | 170-171 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T10 | 341-342 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T11 | 388-393 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T12 | 394-397 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T13 | 398-399 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T14 | 560-568 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T15 | 599-600 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T16 | 656-661 | http://purl.obolibrary.org/obo/CLO_0009133 | denotes | S; S1 |
| T17 | 767-769 | http://purl.obolibrary.org/obo/CLO_0008922 | denotes | S2 |
| T18 | 767-769 | http://purl.obolibrary.org/obo/CLO_0050052 | denotes | S2 |
| T19 | 776-784 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
| T20 | 970-971 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T4 | 178-182 | Chemical | denotes | beta | http://purl.obolibrary.org/obo/CHEBI_10545 |
| T5 | 431-447 | Chemical | denotes | ribonucleic acid | http://purl.obolibrary.org/obo/CHEBI_33697 |
| T6 | 443-447 | Chemical | denotes | acid | http://purl.obolibrary.org/obo/CHEBI_37527 |
| T7 | 449-452 | Chemical | denotes | RNA | http://purl.obolibrary.org/obo/CHEBI_33697 |
| T8 | 508-516 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T9 | 573-581 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T10 | 601-606 | Chemical | denotes | lipid | http://purl.obolibrary.org/obo/CHEBI_18059 |
| T11 | 622-630 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T12 | 693-704 | Chemical | denotes | angiotensin | http://purl.obolibrary.org/obo/CHEBI_48433 |
| T13 | 767-769 | Chemical | denotes | S2 | http://purl.obolibrary.org/obo/CHEBI_29387 |
| T14 | 900-903 | Chemical | denotes | RNA | http://purl.obolibrary.org/obo/CHEBI_33697 |
| T15 | 944-951 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 776-791 | http://purl.obolibrary.org/obo/GO_0061025 | denotes | membrane fusion |
| T2 | 840-853 | http://purl.obolibrary.org/obo/GO_0009653 | denotes | morphogenesis |
| T3 | 883-890 | http://purl.obolibrary.org/obo/GO_0007114 | denotes | budding |
| T4 | 984-1001 | http://purl.obolibrary.org/obo/GO_0019079 | denotes | viral replication |
| T5 | 984-1001 | http://purl.obolibrary.org/obo/GO_0019058 | denotes | viral replication |
| T6 | 1006-1019 | http://purl.obolibrary.org/obo/GO_0006351 | denotes | transcription |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T15 | 0-154 | Sentence | denotes | By the end of the year, 2019, Chinese local health authorities reported the occurrence of a cluster of pneumonia cases in Wuhan in the Hubei Province [1]. |
| T16 | 155-372 | Sentence | denotes | Shortly after, a novel beta coronavirus—which is now designated as severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) [2]—was discovered in the bronchoalveolar lavage fluid of a patient with pneumonia [1,3]. |
| T17 | 373-491 | Sentence | denotes | This enveloped virus has a single-stranded positive sense ribonucleic acid (RNA) genome of approximately 30 kilobases. |
| T18 | 492-615 | Sentence | denotes | Several surface proteins, known as the spike (S), envelope (E), and membrane (M) proteins, are embedded in a lipid bilayer. |
| T19 | 616-895 | Sentence | denotes | These proteins mediate the viral entry (S; S1 unit: binding to host receptor angiotensin-converting enzyme 2 via its receptor binding domain (RBD) and S2 unit: membrane fusion) and are also responsible for viral fusion (M), morphogenesis (E), assembly (E and M), and budding (M). |
| T20 | 896-952 | Sentence | denotes | The RNA is associated with the nucleocapsid (N) protein. |
| T21 | 953-1036 | Sentence | denotes | The latter plays a role in the viral replication and transcription cycle [4,5,6,7]. |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 103-112 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
| T2 | 356-365 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 37 | 531-536 | Gene | denotes | spike | Gene:43740568 |
| 38 | 538-539 | Gene | denotes | S | Gene:43740568 |
| 39 | 693-724 | Gene | denotes | angiotensin-converting enzyme 2 | Gene:59272 |
| 40 | 855-856 | Gene | denotes | E | Gene:43740570 |
| 41 | 869-870 | Gene | denotes | E | Gene:43740570 |
| 42 | 656-657 | Gene | denotes | S | Gene:43740568 |
| 43 | 178-194 | Species | denotes | beta coronavirus | Tax:694002 |
| 44 | 222-269 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
| 45 | 271-281 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 46 | 343-350 | Species | denotes | patient | Tax:9606 |
| 47 | 601-614 | Chemical | denotes | lipid bilayer | MESH:D008051 |
| 48 | 103-112 | Disease | denotes | pneumonia | MESH:D011014 |
| 49 | 356-365 | Disease | denotes | pneumonia | MESH:D011014 |