PMC:7646410 / 49524-50316
Annnotations
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T354 | 262-267 | Body_part | denotes | liver | http://purl.obolibrary.org/obo/UBERON_0002107 |
| T355 | 345-350 | Body_part | denotes | stool | http://purl.obolibrary.org/obo/UBERON_0001988 |
| T356 | 528-544 | Body_part | denotes | large intestines | http://purl.obolibrary.org/obo/UBERON_0000059 |
| T357 | 683-692 | Body_part | denotes | esophagus | http://purl.obolibrary.org/obo/UBERON_0001043 |
| T358 | 694-701 | Body_part | denotes | stomach | http://purl.obolibrary.org/obo/UBERON_0000945 |
| T359 | 703-711 | Body_part | denotes | duodenum | http://purl.obolibrary.org/obo/UBERON_0002114 |
| T360 | 723-738 | Body_part | denotes | large intestine | http://purl.obolibrary.org/obo/UBERON_0000059 |
| T361 | 729-738 | Body_part | denotes | intestine | http://purl.obolibrary.org/obo/UBERON_0000160 |
| T362 | 754-760 | Body_part | denotes | rectum | http://purl.obolibrary.org/obo/UBERON_0001052 |
| T363 | 775-786 | Body_part | denotes | endothelium | http://purl.obolibrary.org/obo/UBERON_0001986 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T286 | 262-267 | Body_part | denotes | liver | http://purl.org/sig/ont/fma/fma7197 |
| T287 | 317-320 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T288 | 345-350 | Body_part | denotes | stool | http://purl.org/sig/ont/fma/fma64183 |
| T289 | 528-544 | Body_part | denotes | large intestines | http://purl.org/sig/ont/fma/fma7201 |
| T290 | 580-602 | Body_part | denotes | gastrointestinal tract | http://purl.org/sig/ont/fma/fma71132 |
| T291 | 683-692 | Body_part | denotes | esophagus | http://purl.org/sig/ont/fma/fma7131 |
| T292 | 694-701 | Body_part | denotes | stomach | http://purl.org/sig/ont/fma/fma7148 |
| T293 | 703-711 | Body_part | denotes | duodenum | http://purl.org/sig/ont/fma/fma7206 |
| T294 | 723-738 | Body_part | denotes | large intestine | http://purl.org/sig/ont/fma/fma7201 |
| T295 | 754-760 | Body_part | denotes | rectum | http://purl.org/sig/ont/fma/fma14544 |
| T296 | 775-786 | Body_part | denotes | endothelium | http://purl.org/sig/ont/fma/fma63916 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T364 | 89-97 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T365 | 145-153 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T366 | 227-235 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T367 | 378-386 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T368 | 378-382 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T369 | 389-398 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T370 | 554-562 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T371 | 554-558 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T720 | 191-193 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
| T721 | 262-267 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
| T722 | 262-267 | http://www.ebi.ac.uk/efo/EFO_0000887 | denotes | liver |
| T723 | 481-487 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | active |
| T724 | 528-544 | http://purl.obolibrary.org/obo/UBERON_0000059 | denotes | large intestines |
| T725 | 528-544 | http://www.ebi.ac.uk/efo/EFO_0000840 | denotes | large intestines |
| T726 | 580-602 | http://purl.obolibrary.org/obo/UBERON_0005409 | denotes | gastrointestinal tract |
| T727 | 683-692 | http://purl.obolibrary.org/obo/UBERON_0001043 | denotes | esophagus |
| T728 | 723-738 | http://purl.obolibrary.org/obo/UBERON_0000059 | denotes | large intestine |
| T729 | 723-738 | http://www.ebi.ac.uk/efo/EFO_0000840 | denotes | large intestine |
| T730 | 754-760 | http://purl.obolibrary.org/obo/UBERON_0001052 | denotes | rectum |
| T731 | 754-760 | http://purl.obolibrary.org/obo/UBERON_0006866 | denotes | rectum |
| T732 | 775-786 | http://purl.obolibrary.org/obo/UBERON_0001986 | denotes | endothelium |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T86646 | 419-427 | Chemical | denotes | electron | http://purl.obolibrary.org/obo/CHEBI_10545 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10924 | 481-505 | http://purl.obolibrary.org/obo/GO_1903902 | denotes | active viral replication |
| T44741 | 488-505 | http://purl.obolibrary.org/obo/GO_0019079 | denotes | viral replication |
| T20 | 488-505 | http://purl.obolibrary.org/obo/GO_0019058 | denotes | viral replication |
| T21 | 565-572 | http://purl.obolibrary.org/obo/GO_0009606 | denotes | tropism |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T236 | 41-60 | Phenotype | denotes | respiratory illness | http://purl.obolibrary.org/obo/HP_0002086 |
| T237 | 145-153 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
| T238 | 155-163 | Phenotype | denotes | vomiting | http://purl.obolibrary.org/obo/HP_0002013 |
| T239 | 175-189 | Phenotype | denotes | abdominal pain | http://purl.obolibrary.org/obo/HP_0002027 |
| T240 | 253-275 | Phenotype | denotes | elevated liver enzymes | http://purl.obolibrary.org/obo/HP_0002910 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 1659 | 647-651 | Gene | denotes | ACE2 | Gene:59272 |
| 1660 | 9-17 | Species | denotes | patients | Tax:9606 |
| 1661 | 75-83 | Species | denotes | patients | Tax:9606 |
| 1662 | 213-221 | Species | denotes | patients | Tax:9606 |
| 1663 | 305-316 | Species | denotes | coronavirus | Tax:11118 |
| 1664 | 364-372 | Species | denotes | patients | Tax:9606 |
| 1665 | 554-564 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 1666 | 41-60 | Disease | denotes | respiratory illness | MESH:D012140 |
| 1667 | 89-97 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1668 | 145-153 | Disease | denotes | diarrhea | MESH:D003967 |
| 1669 | 155-163 | Disease | denotes | vomiting | MESH:D014839 |
| 1670 | 175-189 | Disease | denotes | abdominal pain | MESH:D015746 |
| 1671 | 227-235 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 1672 | 280-294 | Disease | denotes | biliary stasis | MESH:D002779 |
| 1673 | 378-398 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T222 | 0-198 | Sentence | denotes | Although patients typically present with respiratory illness, up to 40% of patients with COVID-19 present with digestive symptoms, which include diarrhea, vomiting, and acute abdominal pain (36–38). |
| T223 | 199-300 | Sentence | denotes | Additionally, patients with COVID-19 commonly develop elevated liver enzymes and biliary stasis (39). |
| T224 | 301-553 | Sentence | denotes | The coronavirus RNA was readily detected in stool specimens of patients with SARS-CoV-2 infection, and the results of electron microscopy of biopsy and autopsy specimens confirmed active viral replication in both the small and large intestines (40–42). |
| T225 | 554-792 | Sentence | denotes | SARS-CoV-2 tropism to the gastrointestinal tract is likely due to its abundant expression of ACE2 receptors, specifically in the esophagus, stomach, duodenum, small and large intestine (including the rectum), and biliary endothelium (43). |