PMC:7646269 / 8821-9915
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T13 | 64-79 | Body_part | denotes | coronary artery | http://purl.org/sig/ont/fma/fma49893 |
| T14 | 121-131 | Body_part | denotes | renal cell | http://purl.org/sig/ont/fma/fma86785 |
| T15 | 127-131 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T16 | 488-493 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T17 | 760-765 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T12 | 64-79 | Body_part | denotes | coronary artery | http://purl.obolibrary.org/obo/UBERON_0001621 |
| T13 | 73-79 | Body_part | denotes | artery | http://purl.obolibrary.org/obo/UBERON_0001637 |
| T14 | 488-493 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T15 | 526-530 | Body_part | denotes | lobe | http://purl.obolibrary.org/obo/UBERON_3010752 |
| T16 | 760-765 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T57 | 50-62 | Disease | denotes | hypertension | http://purl.obolibrary.org/obo/MONDO_0005044 |
| T58 | 64-87 | Disease | denotes | coronary artery disease | http://purl.obolibrary.org/obo/MONDO_0005010 |
| T59 | 73-87 | Disease | denotes | artery disease | http://purl.obolibrary.org/obo/MONDO_0000473 |
| T60 | 121-141 | Disease | denotes | renal cell carcinoma | http://purl.obolibrary.org/obo/MONDO_0005086|http://purl.obolibrary.org/obo/MONDO_0005549 |
| T62 | 132-141 | Disease | denotes | carcinoma | http://purl.obolibrary.org/obo/MONDO_0004993 |
| T63 | 221-240 | Disease | denotes | respiratory failure | http://purl.obolibrary.org/obo/MONDO_0021113 |
| T64 | 916-918 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T44 | 14-15 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T45 | 37-38 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T46 | 73-79 | http://purl.obolibrary.org/obo/UBERON_0001637 | denotes | artery |
| T47 | 73-79 | http://www.ebi.ac.uk/efo/EFO_0000814 | denotes | artery |
| T48 | 127-131 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T49 | 486-487 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T50 | 488-493 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T51 | 751-752 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T52 | 760-765 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T61 | 653-661 | Chemical | denotes | cefepime | http://purl.obolibrary.org/obo/CHEBI_478164 |
| T62 | 666-676 | Chemical | denotes | vancomycin | http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842 |
| T64 | 875-884 | Chemical | denotes | meropenem | http://purl.obolibrary.org/obo/CHEBI_43968 |
| T65 | 886-896 | Chemical | denotes | vancomycin | http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842 |
| T67 | 902-914 | Chemical | denotes | voriconazole | http://purl.obolibrary.org/obo/CHEBI_10023 |
| T68 | 1075-1085 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T42 | 50-62 | Phenotype | denotes | hypertension | http://purl.obolibrary.org/obo/HP_0000822 |
| T43 | 89-115 | Phenotype | denotes | transient ischaemic attack | http://purl.obolibrary.org/obo/HP_0002326 |
| T44 | 121-141 | Phenotype | denotes | renal cell carcinoma | http://purl.obolibrary.org/obo/HP_0005584 |
| T45 | 221-240 | Phenotype | denotes | respiratory failure | http://purl.obolibrary.org/obo/HP_0002878 |
| T46 | 582-599 | Phenotype | denotes | pneumomediastinum | http://purl.obolibrary.org/obo/HP_0025421 |
| T47 | 960-972 | Phenotype | denotes | leukocytosis | http://purl.obolibrary.org/obo/HP_0001974 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T107 | 0-289 | Sentence | denotes | Patient 2 was a 79‐year‐old man with a history of hypertension, coronary artery disease, transient ischaemic attack, and renal cell carcinoma who was transferred to the ICU on hospital day 6 for worsening acute hypoxemic respiratory failure requiring intubation and mechanical ventilation. |
| T108 | 290-411 | Sentence | denotes | He was afebrile and had been on non‐invasive ventilation (NIV) for 6 days before Aspergillus isolation on hospital day 7. |
| T109 | 412-485 | Sentence | denotes | Respiratory culture grew Aspergillus fumigatus and Staphylococcus aureus. |
| T110 | 486-622 | Sentence | denotes | A chest CT showed dense bilateral lower lobe consolidations, multifocal ground‐glass opacities, pneumomediastinum and pneumopericardium. |
| T111 | 623-677 | Sentence | denotes | He was initially treated with cefepime and vancomycin. |
| T112 | 678-750 | Sentence | denotes | Voriconazole was started at the second positive culture for Aspergillus. |
| T113 | 751-840 | Sentence | denotes | A repeat chest CT showed similar findings together with worsening ground‐glass opacities. |
| T114 | 841-1031 | Sentence | denotes | Despite subsequent treatment with meropenem, vancomycin, and voriconazole, he continued to deteriorate with persistent leukocytosis, worsening respiratory status, and multiorgan dysfunction. |
| T115 | 1032-1094 | Sentence | denotes | He expired 13 days after the initiation of antifungal therapy. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 315 | 437-458 | Species | denotes | Aspergillus fumigatus | Tax:746128 |
| 316 | 463-484 | Species | denotes | Staphylococcus aureus | Tax:1280 |
| 317 | 371-382 | Species | denotes | Aspergillus | Tax:746128 |
| 318 | 738-749 | Species | denotes | Aspergillus | Tax:746128 |
| 319 | 653-661 | Chemical | denotes | cefepime | MESH:D000077723 |
| 320 | 666-676 | Chemical | denotes | vancomycin | MESH:D014640 |
| 321 | 678-690 | Chemical | denotes | Voriconazole | MESH:D065819 |
| 322 | 875-884 | Chemical | denotes | meropenem | MESH:D000077731 |
| 323 | 886-896 | Chemical | denotes | vancomycin | MESH:D014640 |
| 324 | 902-914 | Chemical | denotes | voriconazole | MESH:D065819 |
| 325 | 50-62 | Disease | denotes | hypertension | MESH:D006973 |
| 326 | 64-87 | Disease | denotes | coronary artery disease | MESH:D003324 |
| 327 | 121-141 | Disease | denotes | renal cell carcinoma | MESH:C538614 |
| 328 | 221-240 | Disease | denotes | respiratory failure | MESH:D012131 |
| 329 | 604-621 | Disease | denotes | pneumopericardium | MESH:D011026 |
| 330 | 960-972 | Disease | denotes | leukocytosis | MESH:D007964 |
| 331 | 1008-1030 | Disease | denotes | multiorgan dysfunction | MESH:D009102 |