PMC:7646269 / 7982-8820
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T12 | 328-333 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T11 | 328-333 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T50 | 51-55 | Disease | denotes | COPD | http://purl.obolibrary.org/obo/MONDO_0005002 |
| T51 | 60-77 | Disease | denotes | pharyngeal cancer | http://purl.obolibrary.org/obo/MONDO_0005517 |
| T52 | 71-77 | Disease | denotes | cancer | http://purl.obolibrary.org/obo/MONDO_0004992 |
| T53 | 131-166 | Disease | denotes | acute respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T54 | 137-166 | Disease | denotes | respiratory distress syndrome | http://purl.obolibrary.org/obo/MONDO_0009971 |
| T55 | 168-172 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T56 | 772-774 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T41 | 38-39 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T42 | 326-327 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T43 | 328-333 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T55 | 415-423 | Chemical | denotes | cefepime | http://purl.obolibrary.org/obo/CHEBI_478164 |
| T56 | 428-438 | Chemical | denotes | vancomycin | http://purl.obolibrary.org/obo/CHEBI_28001|http://purl.obolibrary.org/obo/CHEBI_76842 |
| T58 | 561-572 | Chemical | denotes | antibiotics | http://purl.obolibrary.org/obo/CHEBI_33281 |
| T59 | 577-589 | Chemical | denotes | voriconazole | http://purl.obolibrary.org/obo/CHEBI_10023 |
| T60 | 819-829 | Chemical | denotes | antifungal | http://purl.obolibrary.org/obo/CHEBI_35718 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T36 | 51-55 | Phenotype | denotes | COPD | http://purl.obolibrary.org/obo/HP_0006510 |
| T37 | 71-77 | Phenotype | denotes | cancer | http://purl.obolibrary.org/obo/HP_0002664 |
| T38 | 137-157 | Phenotype | denotes | respiratory distress | http://purl.obolibrary.org/obo/HP_0002098 |
| T39 | 185-190 | Phenotype | denotes | shock | http://purl.obolibrary.org/obo/HP_0031273 |
| T40 | 520-532 | Phenotype | denotes | Leukocytosis | http://purl.obolibrary.org/obo/HP_0001974 |
| T41 | 604-622 | Phenotype | denotes | intermittent fever | http://purl.obolibrary.org/obo/HP_0001954 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T99 | 0-191 | Sentence | denotes | Patient 1 was an 82‐year‐old man with a history of COPD and pharyngeal cancer who was transferred to the ICU on hospital day 3 for acute respiratory distress syndrome (ARDS) and septic shock. |
| T100 | 192-325 | Sentence | denotes | He was afebrile at Aspergillus isolation on hospital day 15, but respiratory status deteriorated with increased FiO2 from 50% to 80%. |
| T101 | 326-384 | Sentence | denotes | A chest radiograph showed worsening bilateral infiltrates. |
| T102 | 385-439 | Sentence | denotes | He was initially treated with cefepime and vancomycin. |
| T103 | 440-519 | Sentence | denotes | Voriconazole was added 3 days after the first positive culture for Aspergillus. |
| T104 | 520-590 | Sentence | denotes | Leukocytosis persisted on broad‐spectrum antibiotics and voriconazole. |
| T105 | 591-700 | Sentence | denotes | He developed intermittent fever with worsening respiratory status and required continued vasopressor support. |
| T106 | 701-838 | Sentence | denotes | The family subsequently requested no further aggressive treatment, and he passed away 17 days after the initiation of antifungal therapy. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 284 | 211-222 | Species | denotes | Aspergillus | Tax:746128 |
| 285 | 507-518 | Species | denotes | Aspergillus | Tax:746128 |
| 286 | 304-308 | Chemical | denotes | FiO2 | |
| 287 | 415-423 | Chemical | denotes | cefepime | MESH:D000077723 |
| 288 | 428-438 | Chemical | denotes | vancomycin | MESH:D014640 |
| 289 | 440-452 | Chemical | denotes | Voriconazole | MESH:D065819 |
| 290 | 577-589 | Chemical | denotes | voriconazole | MESH:D065819 |
| 291 | 51-55 | Disease | denotes | COPD | MESH:D029424 |
| 292 | 71-77 | Disease | denotes | cancer | MESH:D009369 |
| 293 | 131-166 | Disease | denotes | acute respiratory distress syndrome | MESH:D012128 |
| 294 | 168-172 | Disease | denotes | ARDS | MESH:D012128 |
| 295 | 178-190 | Disease | denotes | septic shock | MESH:D012772 |
| 296 | 520-532 | Disease | denotes | Leukocytosis | MESH:D007964 |
| 297 | 617-622 | Disease | denotes | fever | MESH:D005334 |