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PMC:7646269 / 5337-7448 JSONTXT

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LitCovid_Glycan-Motif-Structure

Id Subject Object Predicate Lexical cue
T3 1227-1240 https://glytoucan.org/Structures/Glycans/G93424OB denotes galactomannan

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 300-315 Body_part denotes Coronary artery http://purl.org/sig/ont/fma/fma49893
T6 799-804 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T7 945-961 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T8 957-961 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T9 1001-1009 Body_part denotes Platelet http://purl.org/sig/ont/fma/fma62851
T10 1176-1181 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083
T11 1221-1226 Body_part denotes Serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T5 300-315 Body_part denotes Coronary artery http://purl.obolibrary.org/obo/UBERON_0001621
T6 309-315 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T7 799-804 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T8 951-956 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T9 1176-1181 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977
T10 1221-1226 Body_part denotes Serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T35 52-60 Disease denotes COVID‐19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 112-125 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T37 244-256 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T38 274-282 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T39 300-323 Disease denotes Coronary artery disease http://purl.obolibrary.org/obo/MONDO_0005010
T40 309-323 Disease denotes artery disease http://purl.obolibrary.org/obo/MONDO_0000473
T41 341-378 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T42 361-378 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T43 407-431 Disease denotes cerebrovascular accident http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057|http://purl.obolibrary.org/obo/MONDO_0020671
T46 460-466 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T47 485-493 Disease denotes Dementia http://purl.obolibrary.org/obo/MONDO_0001627
T48 887-896 Disease denotes pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T49 1886-1894 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T25 201-205 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T26 201-205 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T27 207-211 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T28 207-211 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T29 213-217 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T30 213-217 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T31 219-223 http://purl.obolibrary.org/obo/UBERON_0003101 denotes Male
T32 219-223 http://www.ebi.ac.uk/efo/EFO_0000970 denotes Male
T33 309-315 http://purl.obolibrary.org/obo/UBERON_0001637 denotes artery
T34 309-315 http://www.ebi.ac.uk/efo/EFO_0000814 denotes artery
T35 799-804 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T36 951-956 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 957-961 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T31 1091-1102 Chemical denotes Lactic acid http://purl.obolibrary.org/obo/CHEBI_28358|http://purl.obolibrary.org/obo/CHEBI_78320
T33 1098-1102 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T34 1138-1147 Chemical denotes bilirubin http://purl.obolibrary.org/obo/CHEBI_16990
T35 1182-1192 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T36 1227-1240 Chemical denotes galactomannan http://purl.obolibrary.org/obo/CHEBI_27680
T37 1242-1244 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T38 1368-1378 Chemical denotes prednisone http://purl.obolibrary.org/obo/CHEBI_8382
T39 1543-1551 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T40 1554-1564 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T41 1566-1574 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T42 1577-1587 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T43 1589-1598 Chemical denotes Meropenem http://purl.obolibrary.org/obo/CHEBI_43968
T44 1601-1611 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T45 1613-1621 Chemical denotes Cefepime http://purl.obolibrary.org/obo/CHEBI_478164
T46 1624-1634 Chemical denotes Vancomycin http://purl.obolibrary.org/obo/CHEBI_28001
T47 1697-1708 Chemical denotes Caspofungin http://purl.obolibrary.org/obo/CHEBI_474180
T48 1762-1764 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T3 1227-1240 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T28 93-125 Phenotype denotes invasive pulmonary aspergillosis http://purl.obolibrary.org/obo/HP_0020103
T29 244-256 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T30 341-378 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T31 407-431 Phenotype denotes cerebrovascular accident http://purl.obolibrary.org/obo/HP_0001297
T32 460-466 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T33 485-493 Phenotype denotes Dementia http://purl.obolibrary.org/obo/HP_0000726
T34 678-683 Phenotype denotes Fever http://purl.obolibrary.org/obo/HP_0001945
T35 887-896 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T56 0-125 Sentence denotes Table 1 Clinical characteristics of critically ill COVID‐19‐infected patients with putative invasive pulmonary aspergillosis
T57 126-168 Sentence denotes Patient 1 Patient 2 Patient 3 Patient 4
T58 169-192 Sentence denotes Age (y) 82 79 77 77
T59 193-223 Sentence denotes Gender Male Male Male Male
T60 224-243 Sentence denotes Comorbid conditions
T61 244-273 Sentence denotes Hypertension No Yes No No
T62 274-299 Sentence denotes Diabetes No No No Yes
T63 300-340 Sentence denotes Coronary artery disease No Yes No No
T64 341-395 Sentence denotes Chronic obstructive pulmonary disease Yes No No No
T65 396-448 Sentence denotes History of cerebrovascular accident No Yes No No
T66 449-484 Sentence denotes History of cancer Yes Yes No No
T67 485-509 Sentence denotes Dementia No No No No
T68 510-634 Sentence denotes Timing of positive culture for Aspergillus fumigatus (hospital day) Day 15 and 20 Day 7, 10, and 16 Day 10 and 14 Day 10
T69 635-677 Sentence denotes Clinical features at Aspergillus isolation
T70 678-700 Sentence denotes Fever No No Yes No
T71 701-764 Sentence denotes Respiratory status at Aspergillus isolation IMV IMV IMV IMV
T72 765-944 Sentence denotes New radiographic abnormalities on chest CT or X‐ray Worsening infiltrates Opacities with dense consolidations Cavitary pneumonia Diffuse interstitial and patchy hazy opacities
T73 945-1000 Sentence denotes White blood cell count (103/μL) 32.9 21.1 20.1 20.2
T74 1001-1044 Sentence denotes Platelet count (103/μL) 376 146 420 123
T75 1045-1090 Sentence denotes Procalcitonin (ng/mL) 0.16 0.30 3.30 9.34
T76 1091-1131 Sentence denotes Lactic acid (mmol/L) 1.0 3.6 1.6 3.7
T77 1132-1175 Sentence denotes Total bilirubin (mg/dL) 2.4 1.1 1.4 2.9
T78 1176-1220 Sentence denotes Serum creatinine (mg/dL) 2.6 3.1 1.5 4.1
T79 1221-1270 Sentence denotes Serum galactomannan NA 0.71 Negative Negative
T80 1271-1310 Sentence denotes Vasopressor support Yes Yes Yes Yes
T81 1311-1332 Sentence denotes Inpatient medications
T82 1333-1348 Sentence denotes Glucocorticoids
T83 1349-1414 Sentence denotes Cumulative dose in prednisone equivalent (mg) 932 1000 870 87
T84 1415-1472 Sentence denotes Starting date (hospital day) Day 8 Day 2 Day 2 Day 10
T85 1473-1500 Sentence denotes Duration (d) 10 10 12 3
T86 1501-1529 Sentence denotes Tocilizumab No Yes No No
T87 1530-1634 Sentence denotes Antibiotics Cefepime + Vancomycin Cefepime + Vancomycin Meropenem + Vancomycin Cefepime + Vancomycin
T88 1635-1708 Sentence denotes Antifungal therapy Voriconazole Voriconazole Voriconazole Caspofungin
T89 1709-1780 Sentence denotes Abbreviations: IMV, invasive mechanical ventilation; NA, not available.
T90 1781-1928 Sentence denotes John Wiley & Sons, Ltd This article is being made freely available through PubMed Central as part of the COVID-19 public health emergency response.
T91 1929-2111 Sentence denotes It can be used for unrestricted research re-use and analysis in any form or by any means with acknowledgement of the original source, for the duration of the public health emergency.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
215 541-562 Species denotes Aspergillus fumigatus Tax:746128
216 656-667 Species denotes Aspergillus Tax:746128
217 723-734 Species denotes Aspergillus Tax:746128
218 1182-1192 Chemical denotes creatinine MESH:D003404
219 1368-1378 Chemical denotes prednisone MESH:D011241
220 1501-1512 Chemical denotes Tocilizumab MESH:C502936
221 1543-1551 Chemical denotes Cefepime MESH:D000077723
222 1554-1564 Chemical denotes Vancomycin MESH:D014640
223 1566-1574 Chemical denotes Cefepime MESH:D000077723
224 1577-1587 Chemical denotes Vancomycin MESH:D014640
225 1589-1598 Chemical denotes Meropenem MESH:D000077731
226 1601-1611 Chemical denotes Vancomycin MESH:D014640
227 1613-1621 Chemical denotes Cefepime MESH:D000077723
228 1624-1634 Chemical denotes Vancomycin MESH:D014640
229 1655-1667 Chemical denotes Voriconazole MESH:D065819
230 1669-1681 Chemical denotes Voriconazole MESH:D065819
231 1683-1695 Chemical denotes Voriconazole MESH:D065819
232 244-256 Disease denotes Hypertension MESH:D006973
233 274-282 Disease denotes Diabetes MESH:D003920
234 300-323 Disease denotes Coronary artery disease MESH:D003324
235 341-378 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
236 407-431 Disease denotes cerebrovascular accident MESH:D020521
237 460-466 Disease denotes cancer MESH:D009369
238 678-683 Disease denotes Fever MESH:D005334
239 887-896 Disease denotes pneumonia MESH:D011014
244 70-78 Species denotes patients Tax:9606
245 37-51 Disease denotes critically ill MESH:D016638
246 52-69 Disease denotes COVID‐19‐infected MESH:C000657245
247 93-125 Disease denotes invasive pulmonary aspergillosis MESH:D055744
249 1886-1894 Disease denotes COVID-19 MESH:C000657245