PMC:7640975 / 50875-51453 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T440","span":{"begin":43,"end":51},"obj":"Body_part"},{"id":"T441","span":{"begin":413,"end":421},"obj":"Body_part"},{"id":"T442","span":{"begin":429,"end":435},"obj":"Body_part"},{"id":"T443","span":{"begin":541,"end":554},"obj":"Body_part"}],"attributes":[{"id":"A440","pred":"fma_id","subj":"T440","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A441","pred":"fma_id","subj":"T441","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A442","pred":"fma_id","subj":"T442","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A443","pred":"fma_id","subj":"T443","obj":"http://purl.org/sig/ont/fma/fma9825"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T33","span":{"begin":436,"end":441},"obj":"Body_part"},{"id":"T34","span":{"begin":541,"end":554},"obj":"Body_part"}],"attributes":[{"id":"A33","pred":"uberon_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/UBERON_0002542"},{"id":"A34","pred":"uberon_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/UBERON_0002405"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T87","span":{"begin":215,"end":217},"obj":"Disease"}],"attributes":[{"id":"A87","pred":"mondo_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/MONDO_0009691"},{"id":"A88","pred":"mondo_id","subj":"T87","obj":"http://purl.obolibrary.org/obo/MONDO_0020481"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T563","span":{"begin":135,"end":143},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T564","span":{"begin":157,"end":165},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T565","span":{"begin":180,"end":188},"obj":"http://purl.obolibrary.org/obo/CLO_0001658"},{"id":"T566","span":{"begin":283,"end":284},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T567","span":{"begin":350,"end":351},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T568","span":{"begin":541,"end":554},"obj":"http://purl.obolibrary.org/obo/UBERON_0002405"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T25753","span":{"begin":43,"end":51},"obj":"Chemical"},{"id":"T7958","span":{"begin":126,"end":134},"obj":"Chemical"},{"id":"T63936","span":{"begin":215,"end":217},"obj":"Chemical"},{"id":"T35836","span":{"begin":413,"end":421},"obj":"Chemical"}],"attributes":[{"id":"A55489","pred":"chebi_id","subj":"T25753","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A85080","pred":"chebi_id","subj":"T7958","obj":"http://purl.obolibrary.org/obo/CHEBI_25367"},{"id":"A75465","pred":"chebi_id","subj":"T63936","obj":"http://purl.obolibrary.org/obo/CHEBI_74708"},{"id":"A13267","pred":"chebi_id","subj":"T35836","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T236","span":{"begin":135,"end":165},"obj":"http://purl.obolibrary.org/obo/GO_0032411"},{"id":"T237","span":{"begin":135,"end":156},"obj":"http://purl.obolibrary.org/obo/GO_0015291"},{"id":"T238","span":{"begin":541,"end":562},"obj":"http://purl.obolibrary.org/obo/GO_0002376"},{"id":"T239","span":{"begin":548,"end":562},"obj":"http://purl.obolibrary.org/obo/GO_0003008"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}

{"project":"LitCovid-sentences","denotations":[{"id":"T317","span":{"begin":24,"end":227},"obj":"Sentence"},{"id":"T318","span":{"begin":228,"end":523},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}

{"project":"LitCovid-PubTator","denotations":[{"id":"934","span":{"begin":53,"end":58},"obj":"Gene"},{"id":"935","span":{"begin":60,"end":65},"obj":"Gene"},{"id":"936","span":{"begin":71,"end":76},"obj":"Gene"}],"attributes":[{"id":"A934","pred":"tao:has_database_id","subj":"934","obj":"Gene:8061"},{"id":"A935","pred":"tao:has_database_id","subj":"935","obj":"Gene:79023"},{"id":"A936","pred":"tao:has_database_id","subj":"936","obj":"Gene:57696"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"macromolecular complex. In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. For example, the immune system process-related protein"}