PMC:7640975 / 50875-51453
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T440 | 43-51 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T441 | 413-421 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T442 | 429-435 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T443 | 541-554 | Body_part | denotes | immune system | http://purl.org/sig/ont/fma/fma9825 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T33 | 436-441 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
| T34 | 541-554 | Body_part | denotes | immune system | http://purl.obolibrary.org/obo/UBERON_0002405 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T87 | 215-217 | Disease | denotes | MF | http://purl.obolibrary.org/obo/MONDO_0009691|http://purl.obolibrary.org/obo/MONDO_0020481 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T563 | 135-143 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T564 | 157-165 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T565 | 180-188 | http://purl.obolibrary.org/obo/CLO_0001658 | denotes | activity |
| T566 | 283-284 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T567 | 350-351 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T568 | 541-554 | http://purl.obolibrary.org/obo/UBERON_0002405 | denotes | immune system |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T25753 | 43-51 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T7958 | 126-134 | Chemical | denotes | molecule | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T63936 | 215-217 | Chemical | denotes | MF | http://purl.obolibrary.org/obo/CHEBI_74708 |
| T35836 | 413-421 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T236 | 135-165 | http://purl.obolibrary.org/obo/GO_0032411 | denotes | activity, transporter activity |
| T237 | 135-156 | http://purl.obolibrary.org/obo/GO_0015291 | denotes | activity, transporter |
| T238 | 541-562 | http://purl.obolibrary.org/obo/GO_0002376 | denotes | immune system process |
| T239 | 548-562 | http://purl.obolibrary.org/obo/GO_0003008 | denotes | system process |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T317 | 24-227 | Sentence | denotes | In addition, three proteins, FOSL1, NUP37, and DDX55, were annotated to be associated with structural molecule activity, transporter activity and catalytic activity, respectively, within the MF category. |
| T318 | 228-523 | Sentence | denotes | For further functional annotation of the DEPs, we took a step further by performing COG function classification, which is a widely used tool for analyzing the function and evolution of proteins at the genome scale.44,45 We discovered that most of the DEPs were assigned new biological functions. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 934 | 53-58 | Gene | denotes | FOSL1 | Gene:8061 |
| 935 | 60-65 | Gene | denotes | NUP37 | Gene:79023 |
| 936 | 71-76 | Gene | denotes | DDX55 | Gene:57696 |