PMC:7640975 / 36364-37419
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T312 | 32-36 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T313 | 68-71 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T314 | 229-234 | Body_part | denotes | actin | http://purl.org/sig/ont/fma/fma67843 |
| T315 | 255-259 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T316 | 429-434 | Body_part | denotes | actin | http://purl.org/sig/ont/fma/fma67843 |
| T317 | 468-473 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T318 | 677-685 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T319 | 697-702 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T320 | 733-738 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T321 | 828-832 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T322 | 849-854 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T323 | 1003-1008 | Body_part | denotes | Actin | http://purl.org/sig/ont/fma/fma67843 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T48 | 714-723 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T49 | 785-788 | Disease | denotes | CHN | http://purl.obolibrary.org/obo/MONDO_0011527 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T432 | 32-36 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T433 | 255-259 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T434 | 346-350 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T435 | 365-366 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T436 | 468-473 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T437 | 554-556 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T438 | 594-595 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T439 | 697-702 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T440 | 733-738 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T441 | 789-791 | http://purl.obolibrary.org/obo/CLO_0003788 | denotes | HN |
| T442 | 828-832 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T443 | 849-854 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T444 | 926-931 | http://purl.obolibrary.org/obo/CLO_0007836 | denotes | mouse |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T342 | 554-556 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T343 | 677-685 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T246 | 62-157 | Sentence | denotes | Total RNA was extracted and reverse-transcribed into cDNA for the subsequent analysis via qPCR. |
| T247 | 158-260 | Sentence | denotes | Fold-change values were calculated based on the 2–ΔΔCt method, using β-actin as the housekeeping gene. |
| T248 | 261-512 | Sentence | denotes | Error bars indicate the standard error of three independent experiments (Student’s t test; *p < 0.05). (B) The relative ratio of ANAPC7 and IFIT1 mRNAs normalized to β-actin between PDCoV- and mock-infected cells was calculated based on the qPCR data. |
| T249 | 513-724 | Sentence | denotes | The iTRAQ ratio (PDCoV/Mock) obtained by MS analysis was simultaneously shown as a comparison. (C) Western blot (WB) analysis of the expression of ANAPC7 and IFIT1 proteins in IPEC-J2 cells upon PDCoV infection. |
| T250 | 725-833 | Sentence | denotes | IPEC-J2 cells were mock infected or infected with the PDCoV CHN-HN-1601 strain at an MOI of 0.1 TCID50/cell. |
| T251 | 834-1053 | Sentence | denotes | At 24 hpi, the cells were harvested and processed for WB analysis using rabbit anti-ANAPC7, mouse anti-IFIT1 polyclonal antibodies and the mAb 1A3 specific for PDCoV. β-Actin was included as an internal loading control. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 669 | 227-234 | Gene | denotes | β-actin | Gene:728378 |
| 670 | 390-396 | Gene | denotes | ANAPC7 | Gene:51434 |
| 671 | 401-406 | Gene | denotes | IFIT1 | Gene:3434 |
| 672 | 427-434 | Gene | denotes | β-actin | Gene:728378 |
| 673 | 660-666 | Gene | denotes | ANAPC7 | Gene:100155743 |
| 674 | 671-676 | Gene | denotes | IFIT1 | Gene:100153038 |
| 675 | 918-924 | Gene | denotes | ANAPC7 | Gene:56317 |
| 676 | 937-942 | Gene | denotes | IFIT1 | Gene:15957 |
| 677 | 1001-1008 | Gene | denotes | β-Actin | Gene:728378 |
| 679 | 926-931 | Species | denotes | mouse | Tax:10090 |
| 684 | 459-467 | Disease | denotes | infected | MESH:D007239 |
| 685 | 714-723 | Disease | denotes | infection | MESH:D007239 |
| 686 | 749-757 | Disease | denotes | infected | MESH:D007239 |
| 687 | 761-769 | Disease | denotes | infected | MESH:D007239 |
| 688 | 779-796 | Disease | denotes | PDCoV CHN-HN-1601 | MESH:C535301 |
| 692 | 689-696 | CellLine | denotes | IPEC-J2 | CVCL:2246 |
| 693 | 725-732 | CellLine | denotes | IPEC-J2 | CVCL:2246 |