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PMC:7640975 / 2532-3719 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T18 69-84 Body_part denotes small intestine http://purl.org/sig/ont/fma/fma7200
T19 112-119 Body_part denotes jejunum http://purl.org/sig/ont/fma/fma7207
T20 124-129 Body_part denotes ileum http://purl.org/sig/ont/fma/fma7208
T21 183-199 Body_part denotes small intestinal http://purl.org/sig/ont/fma/fma7200
T22 200-216 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T23 211-216 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T24 347-353 Body_part denotes villus http://purl.org/sig/ont/fma/fma82505
T25 405-421 Body_part denotes small intestinal http://purl.org/sig/ont/fma/fma7200
T26 422-433 Body_part denotes enterocytes http://purl.org/sig/ont/fma/fma62122
T27 506-510 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T28 550-557 Body_part denotes jejunum http://purl.org/sig/ont/fma/fma7207
T29 646-656 Body_part denotes intestinal http://purl.org/sig/ont/fma/fma7199
T30 665-681 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T31 676-681 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T32 761-765 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T33 793-798 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T34 908-924 Body_part denotes epithelial cells http://purl.org/sig/ont/fma/fma66768
T35 919-924 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T36 1130-1135 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 69-84 Body_part denotes small intestine http://purl.obolibrary.org/obo/UBERON_0002108
T5 75-84 Body_part denotes intestine http://purl.obolibrary.org/obo/UBERON_0000160
T6 112-119 Body_part denotes jejunum http://purl.obolibrary.org/obo/UBERON_0002115
T7 124-129 Body_part denotes ileum http://purl.obolibrary.org/obo/UBERON_0002116
T8 154-160 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T9 183-199 Body_part denotes small intestinal http://purl.obolibrary.org/obo/UBERON_0002108
T10 405-421 Body_part denotes small intestinal http://purl.obolibrary.org/obo/UBERON_0002108
T11 550-557 Body_part denotes jejunum http://purl.obolibrary.org/obo/UBERON_0002115

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T7 321-330 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T8 999-1007 Disease denotes diarrhea http://purl.obolibrary.org/obo/MONDO_0001673
T9 1042-1057 Disease denotes gastroenteritis http://purl.obolibrary.org/obo/MONDO_0002269
T10 1167-1176 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T33 6-9 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T34 69-84 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestine
T35 112-119 http://purl.obolibrary.org/obo/UBERON_0002115 denotes jejunum
T36 124-129 http://purl.obolibrary.org/obo/UBERON_0002116 denotes ileum
T37 154-160 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T38 183-199 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestinal
T39 200-210 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T40 211-216 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T41 405-421 http://purl.obolibrary.org/obo/UBERON_0002108 denotes small intestinal
T42 506-515 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell line
T43 550-557 http://purl.obolibrary.org/obo/UBERON_0002115 denotes jejunum
T44 561-562 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 591-594 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T46 646-656 http://purl.obolibrary.org/obo/UBERON_0000160 denotes intestinal
T47 646-656 http://www.ebi.ac.uk/efo/EFO_0000834 denotes intestinal
T48 665-675 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T49 676-681 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T50 682-684 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T51 761-771 http://purl.obolibrary.org/obo/CLO_0000031 denotes cell lines
T52 793-798 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T53 908-918 http://purl.obolibrary.org/obo/CL_0000066 denotes epithelial
T54 919-924 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T55 945-952 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes viruses
T56 1008-1013 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T57 1058-1063 http://purl.obolibrary.org/obo/NCBITaxon_10239 denotes virus
T58 1130-1135 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 999-1007 Phenotype denotes diarrhea http://purl.obolibrary.org/obo/HP_0002014

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T13 393-401 http://purl.obolibrary.org/obo/GO_0070265 denotes necrosis
T14 393-401 http://purl.obolibrary.org/obo/GO_0019835 denotes necrosis
T15 393-401 http://purl.obolibrary.org/obo/GO_0008219 denotes necrosis
T16 393-401 http://purl.obolibrary.org/obo/GO_0001906 denotes necrosis

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T13 0-772 Sentence denotes PDCoV has an obvious enteropathogenic characteristic in pigs.1,6 The small intestine of pigs, in particular the jejunum and ileum, are the primary target organs of PDCoV, and porcine small intestinal epithelial cells (IPEC) are the main sites of PDCoV replication in vivo.1,8,9 Histopathologic analyses showed that PDCoV infection not only causes villus atrophy and fall-off but also leads to necrosis of small intestinal enterocytes in infected pigs.1,6 Currently, an immortalized, nontumorigenic IPEC-J2 cell line, originally established using the jejunum of a newborn unsuckled piglet,10 has been shown to exhibit high similarities to porcine intestinal primary epithelial cells,11 and thus can better simulate the porcine physiological state than any other cell lines.
T14 773-1187 Sentence denotes At present, IPEC-J2 cells have been successfully utilized as an ideal in vitro model system for investigating the interactions between epithelial cells and porcine enteric viruses, such as porcine rotavirus,12 porcine endemic diarrhea virus (PEDV),13 and transmissible gastroenteritis virus (TGEV).14 Recently, Jung and colleagues demonstrated that IPEC-J2 cells are quite susceptible to PDCoV infection in vitro.8

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
85 56-60 Species denotes pigs Tax:9823
86 88-92 Species denotes pigs Tax:9823
87 446-450 Species denotes pigs Tax:9823
88 962-979 Species denotes porcine rotavirus Tax:10913
89 1015-1019 Species denotes PEDV Tax:28295
90 1028-1063 Species denotes transmissible gastroenteritis virus Tax:11149
91 1065-1069 Species denotes TGEV Tax:11149
92 175-182 Species denotes porcine Tax:28344
93 638-645 Species denotes porcine Tax:28344
94 718-725 Species denotes porcine Tax:28344
95 929-936 Species denotes porcine Tax:28344
96 983-990 Species denotes porcine Tax:28344
97 315-330 Disease denotes PDCoV infection MESH:D007239
98 354-361 Disease denotes atrophy MESH:D001284
99 393-401 Disease denotes necrosis MESH:D009336
100 437-445 Disease denotes infected MESH:D007239
101 999-1007 Disease denotes diarrhea MESH:D003967
102 1167-1176 Disease denotes infection MESH:D007239
103 498-505 CellLine denotes IPEC-J2 CVCL:2246
104 785-792 CellLine denotes IPEC-J2 CVCL:2246
105 1122-1129 CellLine denotes IPEC-J2 CVCL:2246