PMC:7640975 / 231-1286
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T4 | 35-51 | Body_part | denotes | small intestinal | http://purl.org/sig/ont/fma/fma7200 |
| T5 | 52-68 | Body_part | denotes | epithelial cells | http://purl.org/sig/ont/fma/fma66768 |
| T6 | 63-68 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T7 | 99-104 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T8 | 341-349 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T9 | 383-388 | Body_part | denotes | cells | http://purl.org/sig/ont/fma/fma68646 |
| T10 | 456-464 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T11 | 748-755 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T1 | 35-51 | Body_part | denotes | small intestinal | http://purl.obolibrary.org/obo/UBERON_0002108 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T1 | 17-25 | Disease | denotes | diarrhea | http://purl.obolibrary.org/obo/MONDO_0001673 |
| T2 | 114-123 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T8 | 35-51 | http://purl.obolibrary.org/obo/UBERON_0002108 | denotes | small intestinal |
| T9 | 52-62 | http://purl.obolibrary.org/obo/CL_0000066 | denotes | epithelial |
| T10 | 63-68 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T11 | 99-104 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T12 | 202-210 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labeling |
| T13 | 270-272 | http://purl.obolibrary.org/obo/CL_0000453 | denotes | LC |
| T14 | 273-275 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T15 | 276-278 | http://purl.obolibrary.org/obo/CLO_0007874 | denotes | MS |
| T16 | 383-388 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
| T17 | 390-391 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T18 | 1019-1020 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T4 | 270-272 | Chemical | denotes | LC | http://purl.obolibrary.org/obo/CHEBI_73582 |
| T5 | 273-275 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T6 | 276-278 | Chemical | denotes | MS | http://purl.obolibrary.org/obo/CHEBI_73613 |
| T7 | 341-349 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T8 | 456-464 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T9 | 729-739 | Chemical | denotes | interferon | http://purl.obolibrary.org/obo/CHEBI_52999 |
| T10 | 748-755 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T1 | 17-25 | Phenotype | denotes | diarrhea | http://purl.obolibrary.org/obo/HP_0002014 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T1 | 667-675 | http://purl.obolibrary.org/obo/GO_0051322 | denotes | anaphase |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 27-132 | Sentence | denotes | Porcine small intestinal epithelial cells (IPEC) are the primary target cells of PDCoV infection in vivo. |
| T5 | 133-389 | Sentence | denotes | Here, isobaric tags for relative and absolute quantification (iTRAQ) labeling coupled to liquid chromatography–tandem mass spectrometry (LC-MS/MS) was used to quantitatively identify differentially expressed proteins (DEPs) in PDCoV-infected IPEC-J2 cells. |
| T6 | 390-504 | Sentence | denotes | A total of 78 DEPs, including 23 upregulated and 55 downregulated proteins, were identified at 24 h postinfection. |
| T7 | 505-574 | Sentence | denotes | The data are available via ProteomeXchange with identifier PXD019975. |
| T8 | 575-930 | Sentence | denotes | To ensure reliability of the proteomics data, two randomly selected DEPs, the downregulated anaphase-promoting complex subunit 7 (ANAPC7) and upregulated interferon-induced protein with tetratricopeptide repeats 1 (IFIT1), were verified by real-time PCR and Western blot, and the results of which indicate that the proteomics data were reliable and valid. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 21 | 667-703 | Gene | denotes | anaphase-promoting complex subunit 7 | Gene:51434 |
| 22 | 705-711 | Gene | denotes | ANAPC7 | Gene:51434 |
| 23 | 729-788 | Gene | denotes | interferon-induced protein with tetratricopeptide repeats 1 | Gene:3434 |
| 24 | 790-795 | Gene | denotes | IFIT1 | Gene:3434 |
| 29 | 11-16 | Species | denotes | swine | Tax:9823 |
| 30 | 27-34 | Species | denotes | Porcine | Tax:28344 |
| 31 | 17-25 | Disease | denotes | diarrhea | MESH:D003967 |
| 32 | 114-123 | Disease | denotes | infection | MESH:D007239 |
| 33 | 360-374 | Disease | denotes | PDCoV-infected | MESH:D007239 |
| 35 | 375-382 | CellLine | denotes | IPEC-J2 | CVCL:2246 |