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PMC:7640975 / 12890-14225 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T100 638-647 Body_part denotes capillary http://purl.org/sig/ont/fma/fma63194

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T20 638-647 Body_part denotes capillary http://purl.obolibrary.org/obo/UBERON_0001982

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T183 0-2 http://purl.obolibrary.org/obo/CL_0000453 denotes LC
T184 3-5 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T185 6-8 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T186 25-32 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T187 33-41 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T188 65-66 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T189 234-241 http://purl.obolibrary.org/obo/CLO_0007225 denotes labeled
T190 242-250 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T191 256-257 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T192 317-325 http://purl.obolibrary.org/obo/PR_000018263 denotes peptides
T193 362-363 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T194 428-429 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T195 504-505 http://purl.obolibrary.org/obo/CLO_0001021 denotes B
T196 747-748 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T197 821-823 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T198 828-830 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T199 831-833 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T200 835-836 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T201 842-844 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T202 984-985 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T203 1018-1020 http://purl.obolibrary.org/obo/CLO_0007874 denotes ms
T204 1121-1123 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T205 1124-1126 http://purl.obolibrary.org/obo/CLO_0007874 denotes MS
T206 1203-1210 http://purl.obolibrary.org/obo/CLO_0001040 denotes 1 × 105
T207 1231-1233 http://purl.obolibrary.org/obo/CLO_0007874 denotes ms
T208 1262-1264 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T92 0-2 Chemical denotes LC http://purl.obolibrary.org/obo/CHEBI_73582
T93 3-5 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T94 6-8 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T95 33-41 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T96 242-250 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T97 317-325 Chemical denotes peptides http://purl.obolibrary.org/obo/CHEBI_16670
T98 452-463 Chemical denotes formic acid http://purl.obolibrary.org/obo/CHEBI_30751
T99 459-463 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T100 477-489 Chemical denotes acetonitrile http://purl.obolibrary.org/obo/CHEBI_38472
T101 528-539 Chemical denotes formic acid http://purl.obolibrary.org/obo/CHEBI_30751
T102 535-539 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T103 554-566 Chemical denotes acetonitrile http://purl.obolibrary.org/obo/CHEBI_38472
T104 583-586 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T105 821-823 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T106 828-830 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T107 831-833 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T108 842-844 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T109 975-979 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T110 994-997 Chemical denotes ion http://purl.obolibrary.org/obo/CHEBI_24870
T111 1036-1040 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870
T112 1121-1123 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T113 1124-1126 Chemical denotes MS http://purl.obolibrary.org/obo/CHEBI_73613
T114 1211-1215 Chemical denotes ions http://purl.obolibrary.org/obo/CHEBI_24870

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T71 0-207 Sentence denotes LC-MS/MS analyses of the labeled peptides were carried out using a Q-Exactive mass spectrometer (Thermo Fisher Scientific, San Jose, CA, USA) combined with an EASY-nLC 1200 system (Thermo Fisher Scientific).
T72 208-568 Sentence denotes After loading 2 μg of the labeled peptides onto a C18 reversed phase HPLC column (Thermo Fisher Scientific), peptides were chromatographed for 120 min at a flow rate of 300 nL/min over gradients from 2–80% (mobile phase A comprising 0.1% (v/v) formic acid and 2% (v/v) acetonitrile; mobile phase B comprising 0.1% (v/v) formic acid and 80% (v/v) acetonitrile).
T73 569-710 Sentence denotes The following ion source parameters, including spray voltage 1.8 kV, capillary temperature 275 °C and declustering potential 100 V, were set.
T74 711-834 Sentence denotes The mass spectrometer was run using a data-dependent Top-20 acquisition mode, switching automatically between MS and MS/MS.
T75 835-1021 Sentence denotes A full MS scan ranging from 350 to 1300 m/z was conducted at 70 000 resolution with an automatic gain control (AGC) target value of 3 × 106 ions and a maximum ion transfer (IT) of 20 ms.
T76 1022-1335 Sentence denotes The precursor ions were fragmented by means of high-energy collisional dissociation (HCD), and all MS/MS spectra were scanned using the following parameters: resolution 17 500; AGC 1 × 105 ions; maximum IT 50 ms; dynamic exclusion duration 18 s; normalized collision energy 30%; and intensity threshold 1.6 × 105.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
249 317-325 Chemical denotes peptides MESH:D010455
250 452-463 Chemical denotes formic acid MESH:C030544
251 477-489 Chemical denotes acetonitrile MESH:C032159
252 528-539 Chemical denotes formic acid MESH:C030544
253 554-566 Chemical denotes acetonitrile MESH:C032159