PMC:7597510 / 4428-5445
Annnotations
LitCovid_Glycan-Motif-Structure
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T7 | 34-41 | https://glytoucan.org/Structures/Glycans/G15021LG | denotes | glucose |
| T8 | 378-381 | https://glytoucan.org/Structures/Glycans/G46613JI | denotes | GM1 |
| T9 | 378-381 | https://glytoucan.org/Structures/Glycans/G48558GR | denotes | GM1 |
| T10 | 383-386 | https://glytoucan.org/Structures/Glycans/G61168WC | denotes | GM2 |
| T11 | 383-386 | https://glytoucan.org/Structures/Glycans/G79389NT | denotes | GM2 |
| T12 | 388-392 | https://glytoucan.org/Structures/Glycans/G46677TE | denotes | GD1a |
| T13 | 388-392 | https://glytoucan.org/Structures/Glycans/G69277LC | denotes | GD1a |
| T14 | 394-398 | https://glytoucan.org/Structures/Glycans/G37184KW | denotes | GD1b |
| T15 | 394-398 | https://glytoucan.org/Structures/Glycans/G97612UN | denotes | GD1b |
| T16 | 400-403 | https://glytoucan.org/Structures/Glycans/G81928IQ | denotes | GD3 |
| T17 | 400-403 | https://glytoucan.org/Structures/Glycans/G98544DH | denotes | GD3 |
| T18 | 405-416 | https://glytoucan.org/Structures/Glycans/G92175CL | denotes | GalNAc-GD1a |
| T19 | 418-422 | https://glytoucan.org/Structures/Glycans/G68110IF | denotes | GT1a |
| T20 | 418-422 | https://glytoucan.org/Structures/Glycans/G93468NI | denotes | GT1a |
| T21 | 424-428 | https://glytoucan.org/Structures/Glycans/G05952XV | denotes | GT1b |
| T22 | 424-428 | https://glytoucan.org/Structures/Glycans/G40183QN | denotes | GT1b |
| T23 | 430-434 | https://glytoucan.org/Structures/Glycans/G17077FL | denotes | GQ1b |
| T24 | 430-434 | https://glytoucan.org/Structures/Glycans/G18625KA | denotes | GQ1b |
| T25 | 444-454 | https://glytoucan.org/Structures/Glycans/G00407UJ | denotes | asialo-GM1 |
| T26 | 444-454 | https://glytoucan.org/Structures/Glycans/G21856LC | denotes | asialo-GM1 |
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T22 | 0-5 | Body_part | denotes | Blood | http://purl.org/sig/ont/fma/fma9670 |
| T23 | 28-33 | Body_part | denotes | blood | http://purl.org/sig/ont/fma/fma9670 |
| T24 | 34-41 | Body_part | denotes | glucose | http://purl.org/sig/ont/fma/fma82743 |
| T25 | 79-87 | Body_part | denotes | collagen | http://purl.org/sig/ont/fma/fma63891 |
| T26 | 97-104 | Body_part | denotes | thyroid | http://purl.org/sig/ont/fma/fma9603 |
| T27 | 139-158 | Body_part | denotes | Cerebrospinal fluid | http://purl.org/sig/ont/fma/fma20935 |
| T28 | 160-163 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T29 | 242-249 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T30 | 261-265 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T31 | 334-345 | Body_part | denotes | ganglioside | http://purl.org/sig/ont/fma/fma82816 |
| T32 | 457-468 | Body_part | denotes | Ganglioside | http://purl.org/sig/ont/fma/fma82816 |
| T33 | 570-573 | Body_part | denotes | CSF | http://purl.org/sig/ont/fma/fma20935 |
| T34 | 774-780 | Body_part | denotes | muscle | http://purl.org/sig/ont/fma/fma32558 |
| T35 | 842-855 | Body_part | denotes | tibial nerves | http://purl.org/sig/ont/fma/fma19035 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T7 | 0-5 | Body_part | denotes | Blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T8 | 28-33 | Body_part | denotes | blood | http://purl.obolibrary.org/obo/UBERON_0000178 |
| T9 | 97-104 | Body_part | denotes | thyroid | http://purl.obolibrary.org/obo/UBERON_0002046 |
| T10 | 139-158 | Body_part | denotes | Cerebrospinal fluid | http://purl.obolibrary.org/obo/UBERON_0001359 |
| T11 | 842-855 | Body_part | denotes | tibial nerves | http://purl.obolibrary.org/obo/UBERON_0001323 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T59 | 79-95 | Disease | denotes | collagen disease | http://purl.obolibrary.org/obo/MONDO_0005554 |
| T60 | 97-112 | Disease | denotes | thyroid disease | http://purl.obolibrary.org/obo/MONDO_0003240 |
| T61 | 439-442 | Disease | denotes | GA1 | http://purl.obolibrary.org/obo/MONDO_0009281 |
| T62 | 593-601 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T63 | 956-962 | Disease | denotes | asthma | http://purl.obolibrary.org/obo/MONDO_0004979 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T40 | 0-5 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | Blood |
| T41 | 0-5 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | Blood |
| T42 | 6-11 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T43 | 28-33 | http://purl.obolibrary.org/obo/UBERON_0000178 | denotes | blood |
| T44 | 28-33 | http://www.ebi.ac.uk/efo/EFO_0000296 | denotes | blood |
| T45 | 79-87 | http://purl.obolibrary.org/obo/CHEBI_3815 | denotes | collagen |
| T46 | 261-265 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cell |
| T47 | 278-283 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
| T48 | 383-386 | http://purl.obolibrary.org/obo/CLO_0003535 | denotes | GM2 |
| T49 | 550-551 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T50 | 582-588 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T51 | 774-780 | http://purl.obolibrary.org/obo/UBERON_0001630 | denotes | muscle |
| T52 | 774-780 | http://purl.obolibrary.org/obo/UBERON_0005090 | denotes | muscle |
| T53 | 774-780 | http://www.ebi.ac.uk/efo/EFO_0000801 | denotes | muscle |
| T54 | 774-780 | http://www.ebi.ac.uk/efo/EFO_0001949 | denotes | muscle |
| T55 | 849-855 | http://purl.obolibrary.org/obo/UBERON_0001021 | denotes | nerves |
| T56 | 943-944 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T57 | 1000-1001 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T20 | 34-41 | Chemical | denotes | glucose | http://purl.obolibrary.org/obo/CHEBI_17234|http://purl.obolibrary.org/obo/CHEBI_4167 |
| T22 | 116-123 | Chemical | denotes | vitamin | http://purl.obolibrary.org/obo/CHEBI_33229 |
| T23 | 242-249 | Chemical | denotes | protein | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T24 | 334-345 | Chemical | denotes | ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
| T25 | 346-354 | Chemical | denotes | antigens | http://purl.obolibrary.org/obo/CHEBI_59132 |
| T26 | 378-381 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
| T29 | 383-386 | Chemical | denotes | GM2 | http://purl.obolibrary.org/obo/CHEBI_141420|http://purl.obolibrary.org/obo/CHEBI_51013|http://purl.obolibrary.org/obo/CHEBI_60327|http://purl.obolibrary.org/obo/CHEBI_89635 |
| T33 | 388-392 | Chemical | denotes | GD1a | http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607 |
| T35 | 394-398 | Chemical | denotes | GD1b | http://purl.obolibrary.org/obo/CHEBI_28175 |
| T36 | 400-403 | Chemical | denotes | GD3 | http://purl.obolibrary.org/obo/CHEBI_28424|http://purl.obolibrary.org/obo/CHEBI_89636 |
| T38 | 405-416 | Chemical | denotes | GalNAc-GD1a | http://purl.obolibrary.org/obo/CHEBI_59228 |
| T39 | 405-411 | Chemical | denotes | GalNAc | http://purl.obolibrary.org/obo/CHEBI_28037|http://purl.obolibrary.org/obo/CHEBI_28800 |
| T41 | 412-416 | Chemical | denotes | GD1a | http://purl.obolibrary.org/obo/CHEBI_18163|http://purl.obolibrary.org/obo/CHEBI_82607 |
| T43 | 418-422 | Chemical | denotes | GT1a | http://purl.obolibrary.org/obo/CHEBI_27691 |
| T44 | 424-428 | Chemical | denotes | GT1b | http://purl.obolibrary.org/obo/CHEBI_28058 |
| T45 | 430-434 | Chemical | denotes | GQ1b | http://purl.obolibrary.org/obo/CHEBI_27515 |
| T46 | 439-442 | Chemical | denotes | GA1 | http://purl.obolibrary.org/obo/CHEBI_27717|http://purl.obolibrary.org/obo/CHEBI_27938 |
| T48 | 451-454 | Chemical | denotes | GM1 | http://purl.obolibrary.org/obo/CHEBI_18216|http://purl.obolibrary.org/obo/CHEBI_61048|http://purl.obolibrary.org/obo/CHEBI_73110 |
| T51 | 457-468 | Chemical | denotes | Ganglioside | http://purl.obolibrary.org/obo/CHEBI_28892 |
| T52 | 510-518 | Chemical | denotes | antigens | http://purl.obolibrary.org/obo/CHEBI_59132 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 127 | 400-403 | Gene | denotes | GD3 | Gene:117189 |
| 128 | 593-603 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 129 | 627-634 | Species | denotes | patient | Tax:9606 |
| 130 | 931-938 | Species | denotes | patient | Tax:9606 |
| 131 | 34-41 | Chemical | denotes | glucose | MESH:D005947 |
| 132 | 334-345 | Chemical | denotes | ganglioside | MESH:D005732 |
| 133 | 457-468 | Chemical | denotes | Ganglioside | MESH:D005732 |
| 134 | 79-95 | Disease | denotes | collagen disease | MESH:D003095 |
| 135 | 97-112 | Disease | denotes | thyroid disease | MESH:D013959 |
| 136 | 116-137 | Disease | denotes | vitamin abnormalities | MESH:D014802 |
| 137 | 956-962 | Disease | denotes | asthma | MESH:D001249 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T14 | 97-112 | Phenotype | denotes | thyroid disease | http://purl.obolibrary.org/obo/HP_0000820 |
| T15 | 956-962 | Phenotype | denotes | asthma | http://purl.obolibrary.org/obo/HP_0002099 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T3 | 781-797 | http://purl.obolibrary.org/obo/GO_0001508 | denotes | action potential |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T33 | 0-138 | Sentence | denotes | Blood tests revealed normal blood glucose levels and no findings suggestive of collagen disease, thyroid disease or vitamin abnormalities. |
| T34 | 139-273 | Sentence | denotes | Cerebrospinal fluid (CSF) assessment at admission at approximately 3 weeks after onset revealed normal protein levels and cell counts. |
| T35 | 274-329 | Sentence | denotes | All tests for antiganglioside antibodies were negative. |
| T36 | 330-456 | Sentence | denotes | The ganglioside antigens used in the ELISA were GM1, GM2, GD1a, GD1b, GD3, GalNAc-GD1a, GT1a, GT1b, GQ1b and GA1 (asialo-GM1). |
| T37 | 457-608 | Sentence | denotes | Ganglioside complexes containing two of the above 10 antigens were also used as described in a previous study.15 CSF was not tested for SARS-CoV-2 PCR. |
| T38 | 609-687 | Sentence | denotes | On admission, the patient’s first electrophysiological examination was normal. |
| T39 | 688-920 | Sentence | denotes | However, the second examination performed 1 week later revealed decreases in compound muscle action potential (CMAP) amplitudes in the median, radial and tibial nerves compared with those obtained in the first examination (table 1). |
| T40 | 921-1017 | Sentence | denotes | Since the patient had a history of asthma, we did not perform lumbar MRI using a contrast agent. |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T6 | 378-381 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |
| T7 | 388-392 | GlycoEpitope | denotes | GD1a | http://www.glycoepitope.jp/epitopes/EP0056 |
| T8 | 394-398 | GlycoEpitope | denotes | GD1b | http://www.glycoepitope.jp/epitopes/EP0059 |
| T9 | 405-416 | GlycoEpitope | denotes | GalNAc-GD1a | http://www.glycoepitope.jp/epitopes/EP0058 |
| T10 | 412-416 | GlycoEpitope | denotes | GD1a | http://www.glycoepitope.jp/epitopes/EP0056 |
| T11 | 418-422 | GlycoEpitope | denotes | GT1a | http://www.glycoepitope.jp/epitopes/EP0066 |
| T12 | 424-428 | GlycoEpitope | denotes | GT1b | http://www.glycoepitope.jp/epitopes/EP0067 |
| T13 | 430-434 | GlycoEpitope | denotes | GQ1b | http://www.glycoepitope.jp/epitopes/EP0069 |
| T14 | 451-454 | GlycoEpitope | denotes | GM1 | http://www.glycoepitope.jp/epitopes/EP0050 |