PMC:7574920 / 47231-47999
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T181 | 146-150 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T182 | 398-401 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T183 | 429-433 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T184 | 524-527 | Body_part | denotes | DNA | http://purl.org/sig/ont/fma/fma74412 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T15 | 200-205 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T398 | 122-124 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T399 | 146-150 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T400 | 391-393 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T401 | 429-433 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T402 | 453-454 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T403 | 655-656 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T93 | 241-249 | Chemical | denotes | solution | http://purl.obolibrary.org/obo/CHEBI_75958 |
| T94 | 251-256 | Chemical | denotes | water | http://purl.obolibrary.org/obo/CHEBI_15377 |
| T95 | 304-319 | Chemical | denotes | oligonucleotide | http://purl.obolibrary.org/obo/CHEBI_7754 |
| T96 | 524-527 | Chemical | denotes | DNA | http://purl.obolibrary.org/obo/CHEBI_16991 |
| T97 | 563-579 | Chemical | denotes | oligonucleotides | http://purl.obolibrary.org/obo/CHEBI_7754 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 307 | 134-139 | Gene | denotes | ORF1a | Gene:43740578 |
| 308 | 144-145 | Gene | denotes | N | Gene:43740575 |
| 309 | 338-341 | Gene | denotes | mix | Gene:83881 |
| 310 | 251-256 | Chemical | denotes | water | MESH:D014867 |
| 311 | 304-319 | Chemical | denotes | oligonucleotide | MESH:D009841 |
| 314 | 427-428 | Gene | denotes | N | Gene:43740575 |
| 315 | 485-486 | Gene | denotes | N | Gene:43740575 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T277 | 0-2 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T278 | 47-49 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T279 | 190-199 | http://purl.obolibrary.org/obo/GO_0009058 | denotes | synthesis |
| T280 | 355-357 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T343 | 0-42 | Sentence | denotes | RT-LAMP primer design and positive control |
| T344 | 43-258 | Sentence | denotes | The RT-LAMP primer sets used in this study have been designed by Zhang et al. (11) against ORF1a and N gene and were synthesized by Sigma-Aldrich (synthesis scale, 0.025 μmol; purification, desalt; solution, water). |
| T345 | 259-394 | Sentence | denotes | The sequences and the concentrations of each oligonucleotide in the 10× primer mix used for the RT-LAMP assay can be found in table S1. |
| T346 | 395-768 | Sentence | denotes | An RNA-positive control for the N gene was amplified from a short fragment from 2019-nCoV_N_Positive control plasmid [Integrated DNA Technologies (IDT), 10006625] with oligonucleotides T7-GeneN-Fragment.for and GeneN-Fragment.rev including the T7 promoter and a subsequent IVT with the MEGAscript T7 Kit (Invitrogen) purified using the RNeasy MinElute Cleanup Kit (QIAGEN). |