PMC:7574920 / 44909-45519 JSONTXT

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T99","span":{"begin":350,"end":357},"obj":"Disease"}],"attributes":[{"id":"A99","pred":"mondo_id","subj":"T99","obj":"http://purl.obolibrary.org/obo/MONDO_0005047"}],"text":"Clinical sample handling\nSpecimens were collected as nasopharyngeal and oropharyngeal flocked swabs in Amies medium (eSwab, Copan Italia). The sample collection happened as part of the routine operation of Heidelberg University Hospital and at public testing stations set up by the City of Heidelberg (fig. S1). Collected samples were transported in sterile containers, delivered to the diagnostic laboratory within a few hours, and then examined directly or stored at 4°C until further processing. Samples were processed in a biosafety level 2 cabinet until inactivation by heat or mixing with a lysis buffer."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T376","span":{"begin":251,"end":258},"obj":"http://purl.obolibrary.org/obo/UBERON_0000473"},{"id":"T377","span":{"begin":307,"end":309},"obj":"http://purl.obolibrary.org/obo/CLO_0050050"},{"id":"T378","span":{"begin":416,"end":417},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T379","span":{"begin":469,"end":472},"obj":"http://purl.obolibrary.org/obo/CLO_0001387"},{"id":"T380","span":{"begin":525,"end":526},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T381","span":{"begin":595,"end":596},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"Clinical sample handling\nSpecimens were collected as nasopharyngeal and oropharyngeal flocked swabs in Amies medium (eSwab, Copan Italia). The sample collection happened as part of the routine operation of Heidelberg University Hospital and at public testing stations set up by the City of Heidelberg (fig. S1). Collected samples were transported in sterile containers, delivered to the diagnostic laboratory within a few hours, and then examined directly or stored at 4°C until further processing. Samples were processed in a biosafety level 2 cabinet until inactivation by heat or mixing with a lysis buffer."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T85","span":{"begin":603,"end":609},"obj":"Chemical"}],"attributes":[{"id":"A85","pred":"chebi_id","subj":"T85","obj":"http://purl.obolibrary.org/obo/CHEBI_35225"}],"text":"Clinical sample handling\nSpecimens were collected as nasopharyngeal and oropharyngeal flocked swabs in Amies medium (eSwab, Copan Italia). The sample collection happened as part of the routine operation of Heidelberg University Hospital and at public testing stations set up by the City of Heidelberg (fig. S1). Collected samples were transported in sterile containers, delivered to the diagnostic laboratory within a few hours, and then examined directly or stored at 4°C until further processing. Samples were processed in a biosafety level 2 cabinet until inactivation by heat or mixing with a lysis buffer."}

{"project":"LitCovid-PubTator","denotations":[{"id":"289","span":{"begin":103,"end":115},"obj":"Chemical"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Clinical sample handling\nSpecimens were collected as nasopharyngeal and oropharyngeal flocked swabs in Amies medium (eSwab, Copan Italia). The sample collection happened as part of the routine operation of Heidelberg University Hospital and at public testing stations set up by the City of Heidelberg (fig. S1). Collected samples were transported in sterile containers, delivered to the diagnostic laboratory within a few hours, and then examined directly or stored at 4°C until further processing. Samples were processed in a biosafety level 2 cabinet until inactivation by heat or mixing with a lysis buffer."}

{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T269","span":{"begin":335,"end":346},"obj":"http://purl.obolibrary.org/obo/GO_0006810"},{"id":"T270","span":{"begin":597,"end":602},"obj":"http://purl.obolibrary.org/obo/GO_0019835"}],"text":"Clinical sample handling\nSpecimens were collected as nasopharyngeal and oropharyngeal flocked swabs in Amies medium (eSwab, Copan Italia). The sample collection happened as part of the routine operation of Heidelberg University Hospital and at public testing stations set up by the City of Heidelberg (fig. S1). Collected samples were transported in sterile containers, delivered to the diagnostic laboratory within a few hours, and then examined directly or stored at 4°C until further processing. Samples were processed in a biosafety level 2 cabinet until inactivation by heat or mixing with a lysis buffer."}

{"project":"LitCovid-sentences","denotations":[{"id":"T326","span":{"begin":0,"end":24},"obj":"Sentence"},{"id":"T327","span":{"begin":25,"end":138},"obj":"Sentence"},{"id":"T328","span":{"begin":139,"end":311},"obj":"Sentence"},{"id":"T329","span":{"begin":312,"end":498},"obj":"Sentence"},{"id":"T330","span":{"begin":499,"end":610},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Clinical sample handling\nSpecimens were collected as nasopharyngeal and oropharyngeal flocked swabs in Amies medium (eSwab, Copan Italia). The sample collection happened as part of the routine operation of Heidelberg University Hospital and at public testing stations set up by the City of Heidelberg (fig. S1). Collected samples were transported in sterile containers, delivered to the diagnostic laboratory within a few hours, and then examined directly or stored at 4°C until further processing. Samples were processed in a biosafety level 2 cabinet until inactivation by heat or mixing with a lysis buffer."}