> top > docs > PMC:7574920 > spans > 43694-44907 > annotations

PMC:7574920 / 43694-44907 JSONTXT

Annnotations TAB JSON ListView MergeView

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T159 202-205 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T160 209-212 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T161 472-475 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T162 479-482 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T163 547-550 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T164 594-597 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T165 613-616 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T166 763-766 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T96 185-193 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T97 461-469 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T98 536-544 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T370 73-74 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T371 163-170 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T372 924-931 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T373 1013-1014 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T374 1051-1052 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T375 1137-1138 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
285 185-195 Species denotes SARS-CoV-2 Tax:2697049
286 461-471 Species denotes SARS-CoV-2 Tax:2697049
287 536-546 Species denotes SARS-CoV-2 Tax:2697049

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T262 88-90 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T263 155-157 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T264 406-408 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T265 737-739 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T266 869-871 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T267 916-918 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T268 1113-1115 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T4 1139-1142 GlycoEpitope denotes Tn5 http://www.glycoepitope.jp/epitopes/AN0083

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T320 0-253 Sentence denotes Our study was designed to investigate the sensitivity and specificity of a colorimetric RT-LAMP assay and to evaluate its suitability as an alternative to RT-qPCR testing for detecting SARS-CoV-2 viral RNA in RNA isolated from pharyngeal swab specimens.
T321 254-329 Sentence denotes This study was conducted in Heidelberg, Germany in March and April of 2020.
T322 330-608 Sentence denotes The study was designed to first evaluate different existing primer sets for RT-LAMP reactions and to use them for (i) detection of SARS-CoV-2 RNA in RNA isolated from pharyngeal swabs and (ii) detection of SARS-CoV-2 RNA directly from swab specimens without prior RNA isolation.
T323 609-883 Sentence denotes All RNA samples used were pseudo-anonymized surplus material from the Heidelberg University Hospital diagnostic laboratory, and RT-qPCR results for these RNA samples were retrieved from the laboratory’s database only after the samples had been analyzed by the RT-LAMP assay.
T324 884-1033 Sentence denotes The study design was to conduct RT-LAMP testing until sufficient samples (at least several hundreds) had been analyzed to obtain a conclusive result.
T325 1034-1213 Sentence denotes We also designed a deep sequencing-based method to validate the outcome of the RT-LAMP reactions using a Tn5 transposase–based fully scalable barcoding strategy (LAMP-sequencing).