PMC:7574920 / 33779-34901
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T131 | 180-184 | Body_part | denotes | hand | http://purl.org/sig/ont/fma/fma9712 |
| T132 | 680-687 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T133 | 734-740 | Body_part | denotes | sputum | http://purl.org/sig/ont/fma/fma312401 |
| T134 | 744-749 | Body_part | denotes | stool | http://purl.org/sig/ont/fma/fma64183 |
| T135 | 881-887 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
| T136 | 1054-1060 | Body_part | denotes | saliva | http://purl.org/sig/ont/fma/fma59862 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T3 | 180-184 | Body_part | denotes | hand | http://purl.obolibrary.org/obo/UBERON_0002398 |
| T4 | 734-740 | Body_part | denotes | sputum | http://purl.obolibrary.org/obo/UBERON_0007311 |
| T5 | 744-749 | Body_part | denotes | stool | http://purl.obolibrary.org/obo/UBERON_0001988 |
| T6 | 881-887 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
| T7 | 1054-1060 | Body_part | denotes | saliva | http://purl.obolibrary.org/obo/UBERON_0001836 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T80 | 144-152 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T81 | 405-413 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T82 | 416-425 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T293 | 125-126 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T294 | 201-202 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T295 | 363-364 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T296 | 403-404 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T297 | 427-428 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T298 | 495-501 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T299 | 507-509 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T300 | 1071-1074 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T301 | 1114-1116 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T302 | 1118-1120 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 245 | 361-362 | Gene | denotes | N | Gene:43740575 |
| 246 | 144-154 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 247 | 405-425 | Disease | denotes | SARS-CoV-2 infection | MESH:C000657245 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T205 | 60-62 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T206 | 306-308 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T207 | 646-648 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T208 | 861-863 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T209 | 1028-1030 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T258 | 0-166 | Sentence | denotes | On the basis of our data, we conclude that the colorimetric RT-LAMP assay would be suitable for identifying individuals with a high or moderate SARS-CoV-2 viral load. |
| T259 | 167-426 | Sentence | denotes | On the other hand, for those with a low viral load (at the onset of illness or during later stages of the disease), the sensitivity of the RT-LAMP assay, in its current implementation using the N-A primer set, is insufficient to detect a SARS-CoV-2 infection. |
| T260 | 427-688 | Sentence | denotes | A number of other LAMP primer sets have been proposed and initially tested (21, 27, 28), showing that optimized primers and the use of combinations of primer sets hold promise to further increase the sensitivity of the RT-LAMP assay for detecting viral genomes. |
| T261 | 689-779 | Sentence | denotes | Furthermore, alternative sample types, e.g., sputum or stool (29), might be more reliable. |
| T262 | 780-1006 | Sentence | denotes | One promising lead for future applications is the exploration of the hot swab–to–RT-LAMP assay using saliva specimens, although the relative sensitivity compared to using pharyngeal swab specimens is currently unclear (30–33). |
| T263 | 1007-1122 | Sentence | denotes | Compatibility of the RT-LAMP assay with direct saliva specimens has been shown using spike-in experiments (22, 34). |