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PMC:7574920 / 295-1212 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T5 432-435 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T6 669-672 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095
T7 805-808 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 640-645 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T4 67-76 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T5 86-94 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T6 519-527 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T7 658-666 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T5 34-38 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T6 230-245 http://purl.obolibrary.org/obo/OBI_0000968 denotes instrumentation
T7 379-385 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T8 508-514 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T9 571-572 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T10 646-653 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T11 709-710 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T12 797-798 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 835-836 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
13 364-367 Gene denotes Dao Gene:1610
14 56-62 Species denotes people Tax:9606
15 86-96 Species denotes SARS-CoV-2 Tax:2697049
16 97-108 Species denotes coronavirus Tax:11118
17 658-668 Species denotes SARS-CoV-2 Tax:2697049
18 67-76 Disease denotes infection MESH:D007239
19 519-527 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T2 140-161 http://purl.obolibrary.org/obo/GO_0001171 denotes reverse transcription
T3 148-161 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T4 163-165 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T5 390-392 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T6 553-555 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T7 622-624 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T8 761-763 http://purl.obolibrary.org/obo/GO_0001171 denotes RT
T9 881-883 http://purl.obolibrary.org/obo/GO_0001171 denotes RT

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 0-109 Sentence denotes We need simple methods to rapidly test large numbers of people for infection with the SARS-CoV-2 coronavirus.
T5 110-246 Sentence denotes Quantitative PCR (qPCR) after reverse transcription (RT), the standard method, is very sensitive but requires expensive instrumentation.
T6 247-363 Sentence denotes Loop-mediated isothermal amplification (LAMP) is an alternative to qPCR that is faster and requires fewer resources.
T7 364-528 Sentence denotes Dao Thi et al. tested the RT-LAMP assay on several hundred clinical RNA samples isolated from pharyngeal swabs collected from individuals being tested for COVID-19.
T8 529-673 Sentence denotes They confirmed that the RT-LAMP assay was a simpler albeit less sensitive option compared to RT-qPCR for large-scale testing for SARS-CoV-2 RNA.
T9 674-917 Sentence denotes These investigators also developed a simplified version of this method (direct swab–to–RT-LAMP assay) that did not require a prior RNA isolation step as well as a method for highly multiplexed sequencing of RT-LAMP reactions (LAMP-sequencing).