PMC:7574920 / 26132-27232
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T114 | 182-185 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T115 | 353-356 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T116 | 447-460 | Body_part | denotes | RNA molecules | http://purl.org/sig/ont/fma/fma84126 |
| T117 | 447-450 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T118 | 481-485 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
| T119 | 698-701 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T120 | 817-820 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T121 | 1054-1057 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T67 | 468-476 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T68 | 509-517 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T69 | 1043-1051 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T231 | 45-47 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T232 | 76-78 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T233 | 107-114 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing |
| T234 | 174-175 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T235 | 260-264 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T236 | 481-485 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T237 | 548-554 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T238 | 636-641 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T239 | 728-733 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T240 | 767-769 | http://purl.obolibrary.org/obo/CLO_0050050 | denotes | S1 |
| T241 | 821-828 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | viruses |
| T242 | 841-846 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tests |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T63 | 451-460 | Chemical | denotes | molecules | http://purl.obolibrary.org/obo/CHEBI_25367 |
| T64 | 607-616 | Chemical | denotes | detergent | http://purl.obolibrary.org/obo/CHEBI_27780 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 217 | 479-480 | Gene | denotes | N | Gene:43740575 |
| 218 | 468-478 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 219 | 1043-1053 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 220 | 509-517 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 221 | 1079-1087 | Disease | denotes | infected | MESH:D007239 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T153 | 36-38 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T154 | 56-58 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T155 | 235-237 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T156 | 296-298 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T157 | 900-902 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T191 | 0-218 | Sentence | denotes | Several reports have indicated that RT-qPCR (18–20) and RT-LAMP assays (21, 22) are compatible with direct testing of nasopharyngeal and oropharyngeal swab specimens without a prior RNA purification or extraction step. |
| T192 | 219-411 | Sentence | denotes | To establish an RT-LAMP assay that could test unprocessed specimens (swab–to–RT-LAMP assay), we first assessed the stability of naked RNA in swab specimens that were collected in Amies medium. |
| T193 | 412-544 | Sentence | denotes | We titrated defined numbers of IVT RNA molecules of the SARS-CoV-2 N gene into swab samples from COVID-19–negative control subjects. |
| T194 | 545-741 | Sentence | denotes | We tested different conditions, particularly the influence of detergent (to inactivate the virus) and heat (to denature the capsid and release the viral RNA as well as inactivate the virus) (figs. |
| T195 | 742-771 | Sentence | denotes | S6 and S7, and data file S1). |
| T196 | 772-1100 | Sentence | denotes | Consistent with previous reports about other RNA viruses (23–25) and tests using heat inactivation of swab specimens for direct RT-qPCR assays (26), these experiments established that native swab specimens and heat-treated swab specimens were compatible for detection of SARS-CoV-2 RNA in swab samples from infected individuals. |