PMC:7574920 / 13111-14325
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T73 | 101-104 | Body_part | denotes | RNA | http://purl.org/sig/ont/fma/fma67095 |
| T74 | 546-550 | Body_part | denotes | gene | http://purl.org/sig/ont/fma/fma74402 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T52 | 533-541 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T53 | 670-672 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
| T54 | 829-831 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
| T55 | 890-892 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
| T56 | 1104-1106 | Disease | denotes | OD | http://purl.obolibrary.org/obo/MONDO_0017178 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T125 | 197-198 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T126 | 347-348 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T127 | 388-389 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T128 | 428-429 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T129 | 455-456 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T130 | 515-516 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T131 | 546-550 | http://purl.obolibrary.org/obo/OGG_0000000002 | denotes | gene |
| T132 | 564-565 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T133 | 580-581 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T134 | 887-888 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T135 | 1145-1146 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T46 | 816-826 | Chemical | denotes | phenol red | http://purl.obolibrary.org/obo/CHEBI_31991 |
| T47 | 816-822 | Chemical | denotes | phenol | http://purl.obolibrary.org/obo/CHEBI_15882 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 164 | 544-545 | Gene | denotes | N | Gene:43740575 |
| 165 | 562-563 | Gene | denotes | N | Gene:43740575 |
| 166 | 533-543 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 167 | 816-826 | Chemical | denotes | phenol red | MESH:D010637 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T69 | 43-45 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T70 | 69-71 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T71 | 177-179 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T72 | 218-220 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T73 | 490-492 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T74 | 1034-1036 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
| T75 | 1175-1177 | http://purl.obolibrary.org/obo/GO_0001171 | denotes | RT |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T83 | 0-100 | Sentence | denotes | Fig. 2 Sensitivity and specificity of the RT-LAMP assay compared to RT-qPCR using clinical samples. |
| T84 | 101-213 | Sentence | denotes | RNA samples isolated from 95 pharyngeal swab specimens were analyzed by the RT-LAMP assay using a 96-well plate. |
| T85 | 214-443 | Sentence | denotes | The RT-LAMP reaction was incubated at 65°C, and the incubation was interrupted at different time points by cooling on ice for 30 s. (A) Photograph of the 96-well plate after a 30-min incubation at 65°C, taken with a mobile phone. |
| T86 | 444-686 | Sentence | denotes | Wells with a yellow color indicate successful RT-LAMP amplification of a fragment of the SARS-CoV-2 N gene (using the N-A primer set). (B) Quantification of the red-to-yellow color change in all wells using spectrophotometric OD measurements. |
| T87 | 687-854 | Sentence | denotes | The color value at the given time points is quantified as the difference between the wavelengths of the two absorbance maxima of phenol red: ΔOD = OD434 nm – OD560 nm. |
| T88 | 855-913 | Sentence | denotes | Yellow (positive) samples yield a ΔOD of about 0.3 to 0.4. |
| T89 | 914-946 | Sentence | denotes | Each line represents one sample. |
| T90 | 947-1183 | Sentence | denotes | For each sample, the line color indicates the CT (cycle threshold) value obtained from RT-qPCR data (using the E-Sarbeco primers) (15). (C) Scatter plot of ΔOD values at the 30-min time point from (B) compared to CT values from RT-qPCR. |
| T91 | 1184-1214 | Sentence | denotes | Each dot is one sample (well). |