PMC:7571312 / 122500-124139 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T7 55-60 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T8 83-88 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T9 274-279 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T10 454-458 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T11 553-557 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T12 630-635 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T13 737-742 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T14 765-770 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T15 1048-1053 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T16 1115-1120 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T17 1310-1315 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T18 1369-1374 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T19 1569-1574 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646
T20 1628-1633 Body_part denotes cells http://purl.org/sig/ont/fma/fma68646

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T105 318-322 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091
T106 877-879 Disease denotes OD http://purl.obolibrary.org/obo/MONDO_0017178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T116 47-54 http://purl.obolibrary.org/obo/CLO_0009526 denotes Vero 76
T117 55-60 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T118 83-88 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T119 274-279 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T120 350-351 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T121 454-458 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T122 553-557 http://purl.obolibrary.org/obo/GO_0005623 denotes Cell
T123 630-635 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T124 737-742 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T125 765-770 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T126 905-909 http://purl.obolibrary.org/obo/CLO_0001550 denotes a 10
T127 1012-1018 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T128 1048-1053 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T129 1070-1076 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T130 1115-1120 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T131 1273-1279 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T132 1310-1315 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T133 1369-1374 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T134 1530-1536 http://purl.obolibrary.org/obo/SO_0000418 denotes signal
T135 1569-1574 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T136 1628-1633 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T9229 104-114 Chemical denotes phenol red http://purl.obolibrary.org/obo/CHEBI_31991
T16403 104-110 Chemical denotes phenol http://purl.obolibrary.org/obo/CHEBI_15882
T61020 398-400 Chemical denotes MT http://purl.obolibrary.org/obo/CHEBI_73614
T87606 501-512 Chemical denotes neutral red http://purl.obolibrary.org/obo/CHEBI_86370
T53163 593-595 Chemical denotes WI http://purl.obolibrary.org/obo/CHEBI_141448
T16600 606-617 Chemical denotes neutral red http://purl.obolibrary.org/obo/CHEBI_86370
T42830 708-719 Chemical denotes neutral red http://purl.obolibrary.org/obo/CHEBI_86370
T67130 815-821 Chemical denotes buffer http://purl.obolibrary.org/obo/CHEBI_35225
T31728 822-830 Chemical denotes solution http://purl.obolibrary.org/obo/CHEBI_75958
T31154 836-840 Chemical denotes EtOH http://purl.obolibrary.org/obo/CHEBI_16236
T66158 845-856 Chemical denotes acetic acid http://purl.obolibrary.org/obo/CHEBI_15366
T49097 852-856 Chemical denotes acid http://purl.obolibrary.org/obo/CHEBI_37527
T82790 985-996 Chemical denotes neutral red http://purl.obolibrary.org/obo/CHEBI_86370
T16617 1246-1257 Chemical denotes neutral red http://purl.obolibrary.org/obo/CHEBI_86370
T95918 1503-1514 Chemical denotes neutral red http://purl.obolibrary.org/obo/CHEBI_86370

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T661 0-46 Sentence denotes All assays were performed in BSL3 containment.
T662 47-141 Sentence denotes Vero 76 cells were plated at 10 000 cells per well using phenol red-free DMEM or IMEM (Gibco).
T663 142-441 Sentence denotes After adhering for 2 h at 37 °C, various concentrations of compound (320, 100, 33, 10, 3.3, 1.0, 0.3, or 0.1 μM) were added and the cells were infected with 2.6 × 103 PFU/well SARS CoV Toronto-2 (provided as a gift from Dr. Heinz Feldman (NIAID, Hamilton, MT)) or mock-infected with the medium only.
T664 442-597 Sentence denotes After 66 h, cell viability was determined using either the neutral red method or the CellTiter-Glo Luminescent Cell Viability Assay (Promega, Madison, WI).
T665 598-760 Sentence denotes For the neutral red method, the cells were washed twice with PBS, and 100 μL of DMEM pH 4.5 containing 0.066% neutral red was added to the cells for 2 h at 37 °C.
T666 761-947 Sentence denotes The cells were again washed twice with PBS, 100 μL of buffer solution (50% EtOH, 1% acetic acid) was added, and the OD was read at 540 nM after a 10 min incubation at 37 °C with shaking.
T667 948-1121 Sentence denotes Data are expressed as the percent of neutral red or luminescent signal in wells of compound-treated cells compared to the signal in wells of uninfected, compound-free cells.
T668 1122-1375 Sentence denotes The 50% effective concentration (EC50) is calculated as the concentration of the compound that increases the percent of the neutral red or luminescent signal in infected, compound-treated cells to 50% of that produced by uninfected, compound-free cells.
T669 1376-1639 Sentence denotes The 50% cytotoxicity concentration (CC50) is calculated as the concentration of the compound that decreases the percent of the neutral red or luminescent signal in uninfected, compound-treated cells to 50% of that produced in uninfected, compound-free cells.51,52

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
2142 318-326 Species denotes SARS CoV Tax:694009
2143 104-114 Chemical denotes phenol red MESH:D010637
2144 120-124 Chemical denotes DMEM
2145 659-662 Chemical denotes PBS MESH:D007854
2146 678-682 Chemical denotes DMEM
2147 800-803 Chemical denotes PBS MESH:D007854
2148 836-840 Chemical denotes EtOH MESH:D000431
2149 845-856 Chemical denotes acetic acid MESH:D019342
2150 285-293 Disease denotes infected MESH:D007239
2151 411-419 Disease denotes infected MESH:D007239
2152 1283-1291 Disease denotes infected MESH:D007239
2153 1384-1396 Disease denotes cytotoxicity MESH:D064420

2_test

Id Subject Object Predicate Lexical cue
33054210-3983963-61913462 1634-1636 3983963 denotes 51
33054210-28359770-61913463 1637-1639 28359770 denotes 52