PMC:7565482 / 11934-12652
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T54 | 126-136 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T55 | 168-175 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T56 | 200-206 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T57 | 207-217 | Body_part | denotes | nucleotide | http://purl.org/sig/ont/fma/fma82740 |
| T58 | 384-395 | Body_part | denotes | amino acids | http://purl.org/sig/ont/fma/fma82739 |
| T59 | 568-575 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T60 | 576-588 | Body_part | denotes | glycoprotein | http://purl.org/sig/ont/fma/fma62925 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T40 | 157-165 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T95 | 193-194 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T96 | 466-468 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T97 | 559-567 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membrane |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 149 | 51-56 | Species | denotes | CoV-2 | Tax:2697049 |
| 153 | 590-591 | Gene | denotes | M | Gene:43740571 |
| 154 | 100-105 | Species | denotes | CoV-2 | Tax:2697049 |
| 155 | 157-167 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T77 | 0-4 | Sentence | denotes | 3.1. |
| T78 | 5-79 | Sentence | denotes | Open Reading Frames and Sequence Isolates for CoV-2-Cons Sequence Creation |
| T79 | 80-396 | Sentence | denotes | For creation of the CoV-2 Consensus sequence, nucleotide sequences from 1731 SARS-CoV-2 genomes were aligned and a full genome nucleotide consensus was created, 23 open reading frames (ORF) were then located in the alignment using the NC_045512.2 and the Finkel et al. [46] coordinates and translated to amino acids. |
| T80 | 397-541 | Sentence | denotes | Of the 23 ORF, 12 were canonical ORF as annotated in NC_045512.2 and 11 in alternative reading frames described by Finkel et al. [46] (Table 1). |
| T81 | 542-718 | Sentence | denotes | In addition, the membrane protein glycoprotein (M), is completely embedded inside an extended ORF (exORFM) without any frameshifts and was not used for separate OLP set design. |