PMC:7565482 / 11218-11920
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T50 | 399-402 | Body_part | denotes | MHC | http://purl.org/sig/ont/fma/fma84079 |
| T51 | 511-515 | Body_part | denotes | cell | http://purl.org/sig/ont/fma/fma68646 |
| T52 | 560-567 | Body_part | denotes | protein | http://purl.org/sig/ont/fma/fma67257 |
| T53 | 662-665 | Body_part | denotes | map | http://purl.org/sig/ont/fma/fma67847 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T39 | 170-178 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T89 | 84-87 | http://purl.obolibrary.org/obo/NCBITaxon_9596 | denotes | pan |
| T90 | 124-129 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | human |
| T91 | 347-354 | http://purl.obolibrary.org/obo/PR_000018263 | denotes | peptide |
| T92 | 381-393 | http://purl.obolibrary.org/obo/NCBITaxon_9606 | denotes | Homo sapiens |
| T93 | 509-515 | http://purl.obolibrary.org/obo/CL_0000236 | denotes | B-cell |
| T94 | 545-546 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 141 | 69-82 | Species | denotes | coronaviruses | Tax:11118 |
| 142 | 88-99 | Species | denotes | coronavirus | Tax:11118 |
| 143 | 101-118 | Species | denotes | betacoronaviruses | Tax:694002 |
| 144 | 124-129 | Species | denotes | human | Tax:9606 |
| 145 | 130-143 | Species | denotes | coronaviruses | Tax:11118 |
| 146 | 170-180 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 147 | 381-393 | Species | denotes | Homo sapiens | Tax:9606 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T69 | 0-301 | Sentence | denotes | To identify previously reported epitopes in the conserved regions of coronaviruses (pan-coronavirus, betacoronaviruses, and human coronaviruses), and match them with the SARS-CoV-2 consensus sequence, searches for experimentally described epitopes were carried out in the Immune Epitope Database [54]. |
| T70 | 302-369 | Sentence | denotes | The search criteria were as follows: “linear peptide; blast option: |
| T71 | 370-380 | Sentence | denotes | 90%; Host: |
| T72 | 381-463 | Sentence | denotes | Homo sapiens; Any MHC restriction; Positive assays only; All assays; Any disease”. |
| T73 | 464-581 | Sentence | denotes | The search yielded 141 epitopes, of which 14 B-cell epitopes and 2 epitopes from a hypothetical protein were removed. |
| T74 | 582-702 | Sentence | denotes | The remaining identified epitopes were subsequently used to generate an epitope map of the respective conserved regions. |