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PMC:7558914 / 4369-8436 JSONTXT

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LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
104 1662-1669 Chemical denotes PI-Prot
105 89-97 Disease denotes COVID-19 MESH:C000657245
106 147-156 Disease denotes Andalusia
107 161-170 Disease denotes Andalusia
111 1990-1996 Chemical denotes oxygen MESH:D010100
112 2046-2052 Chemical denotes oxygen MESH:D010100
113 2410-2418 Disease denotes COVID-19 MESH:C000657245
130 2900-2913 Gene denotes interleukin-6 Gene:3569
131 3173-3186 Gene denotes interleukin-6 Gene:3569
132 3421-3434 Gene denotes interleukin-6 Gene:3569
133 2449-2456 Species denotes patient Tax:9606
134 2481-2488 Species denotes patient Tax:9606
135 2420-2428 Disease denotes COVID-19 MESH:C000657245
136 2522-2541 Disease denotes respiratory illness MESH:D012140
137 2626-2635 Disease denotes pneumonia MESH:D011014
138 2681-2690 Disease denotes Pneumonia MESH:D011014
139 2962-2971 Disease denotes pneumonia MESH:D011014
140 3013-3022 Disease denotes Pneumonia MESH:D011014
141 3210-3219 Disease denotes pneumonia MESH:D011014
142 3232-3238 Disease denotes sepsis MESH:D018805
143 3242-3247 Disease denotes shock MESH:D012769
144 3253-3288 Disease denotes acute respiratory distress syndrome MESH:D012128
145 3290-3294 Disease denotes ARDS MESH:D012128
149 3575-3583 Disease denotes COVID-19 MESH:C000657245
150 3729-3737 Disease denotes COVID-19 MESH:C000657245
151 3808-3816 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T5 2522-2541 Phenotype denotes respiratory illness http://purl.obolibrary.org/obo/HP_0002086
T6 2626-2635 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T7 2681-2690 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T8 2962-2971 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T9 3013-3022 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T10 3210-3219 Phenotype denotes pneumonia http://purl.obolibrary.org/obo/HP_0002090
T11 3232-3238 Phenotype denotes sepsis http://purl.obolibrary.org/obo/HP_0100806
T12 3242-3247 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T13 3259-3279 Phenotype denotes respiratory distress http://purl.obolibrary.org/obo/HP_0002098

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T33 0-2 Sentence denotes 2.
T34 3-24 Sentence denotes Materials and Methods
T35 25-157 Sentence denotes In this study, we used the clinical information provided in the COVID-19 protocols of the largest university hospitals in Andalusia.
T36 158-743 Sentence denotes In Andalusia, hospitals are stratified into 4 categories according to service area and number of medical and surgical specialties [6]: (1) regional university hospitals (referral hospital in the whole autonomous community with all specialties available); (2) specialized university hospitals (referral hospital in a province and with wide number of specialties available); (3) basic general hospitals (referral hospital in a region and with all basic specialties available); (4) highly-specialized hospitals (referral hospital in a local area and with all basic specialties available).
T37 744-827 Sentence denotes We included 6 regional university hospitals and 9 specialized university hospitals:
T38 828-1551 Sentence denotes Hospital Universitario Reina Sofía (Córdoba), Hospital Universitario Juan Ramón Jiménez (Huelva), Hospital Universitario Virgen del Rocío (Sevilla), Hospital Universitario Virgen Macarena (Sevilla), Hospital Virgen de Valme (Sevilla), Complejo Hospitalario Torrecárdenas (Almería), Hospital Universitario de Jerez de la Frontera (Jerez de la Frontera), Hospital Universitario Puerta del Mar (Cádiz), Hospital de Puerto Real (Puerto Real), Hospital Universitario Virgen de las Nieves (Granada), Hospital Universitario San Cecilio (Granada), Complejo Hospitalario de Jaén (Jaén), Hospital Universitario Virgen de la Victoria (Málaga), Hospital Costa del Sol (Marbella), and Hospital Regional Universitario de Málaga (Málaga).
T39 1552-1675 Sentence denotes This study was approved by the Institutional Research Ethics Committee of Málaga on 1 May 2020 (Ethical code: PI-Prot-0520)
T40 1676-1751 Sentence denotes We excluded 19 basic general hospitals and 15 highly-specialized hospitals.
T41 1752-1872 Sentence denotes Normally, the treatment recommendations adopted in the reference hospital indicate how their area of influence proceeds.
T42 1873-2419 Sentence denotes Antiviral treatment, empirical antibacterial agents, adjunctive therapies, anticoagulant treatment, supportive care (oxygen, intravenous fluids, monitoring, high-flow nasal oxygen/noninvasive ventilation, and mechanical ventilation, among others), dosage, method of administration and duration of treatment, drug side effects and interactions, nonrecommended treatment or recommendation for other drugs, hospital circuits, ward organization and care planning, and discharge recommendations were collected from all clinical protocols for COVID-19.
T43 2420-2833 Sentence denotes COVID-19 protocols contained patient groups according to the patient’s clinical condition: mild upper respiratory illness with and without clinical risk factors (aged ≥60 years old and comorbidities), mild pneumonia (defined as CURB-65 Severity Score [7] ≤1 or Pneumonia Severity Index [8] I or II, basal oxygen saturation >95%, respiration rate at rest <22, unilateral opacity, D-dimer <1000 ng/mL (normal range:
T44 2834-2885 Sentence denotes 220–500 ng/mL), ferritin <1000 mcg/L (normal range:
T45 2886-3467 Sentence denotes 8–252 mcg/L), interleukin-6 <40 pg/mL (normal range: <4.4 pg/mL)), moderate pneumonia (defined as CURB-65 Severity Score ≥2 or Pneumonia Severity Index ≥III, basal oxygen saturation >92–95%, respiration rate at rest 22–30, bilateral opacities, D-dimer >1000 ng/mL, ferritin >1000 mcg/L, interleukin-6 <40 pg/mL), and severe pneumonia (defined as sepsis or shock with acute respiratory distress syndrome (ARDS), basal oxygen saturation <92%, respiration rate at rest >30, bilateral opacities, D-dimer >3000 ng/mL, ferritin >1000 mcg/L, interleukin-6 >40 pg/mL, elevated troponin I).
T46 3468-3532 Sentence denotes Prophylaxis in suspected cases was not taken into consideration.
T47 3533-3651 Sentence denotes All protocols included were obtained from COVID-19 teams of each hospital and were the latest updates as of July 2020.
T48 3652-3761 Sentence denotes Protocols are only available for healthcare providers on previous request to COVID-19 teams of each hospital.
T49 3762-3854 Sentence denotes The update of protocols was routinely made by COVID-19 teams when they considered necessary.
T50 3855-3960 Sentence denotes All variables analyzed were categorical and are shown as the absolute value and percentage, respectively.
T51 3961-4067 Sentence denotes Statistical analyses were performed using SPSS Statistics for Windows, version 15.0(IBM, Armonk, NY, USA).