PMC:7558333 / 28816-29925
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T69 | 165-177 | Body_part | denotes | Colonization | http://purl.org/sig/ont/fma/fma14543 |
| T70 | 1055-1060 | Body_part | denotes | Organ | http://purl.org/sig/ont/fma/fma67498 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T44 | 1055-1060 | Body_part | denotes | Organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T169 | 35-43 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T170 | 55-59 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T171 | 129-142 | Disease | denotes | Aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T172 | 205-227 | Disease | denotes | Invasive Aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T173 | 214-227 | Disease | denotes | Aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T174 | 850-872 | Disease | denotes | invasive aspergillosis | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T175 | 859-872 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
| T176 | 880-893 | Disease | denotes | aspergillosis | http://purl.obolibrary.org/obo/MONDO_0005657 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T231 | 121-123 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T232 | 165-177 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | Colonization |
| T233 | 303-305 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T234 | 315-317 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T235 | 364-366 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T236 | 375-377 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T237 | 392-394 | http://purl.obolibrary.org/obo/CLO_0050510 | denotes | 18 |
| T238 | 444-451 | http://purl.obolibrary.org/obo/CLO_0001188 | denotes | 20 (44) |
| T239 | 511-515 | http://purl.obolibrary.org/obo/CLO_0001405 | denotes | 5–11 |
| T240 | 538-540 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T241 | 646-648 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T242 | 655-657 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T243 | 675-677 | http://purl.obolibrary.org/obo/CLO_0050509 | denotes | 27 |
| T244 | 682-684 | http://purl.obolibrary.org/obo/CLO_0001313 | denotes | 36 |
| T245 | 798-806 | http://purl.obolibrary.org/obo/CLO_0008192 | denotes | n (%). P |
| T246 | 836-848 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonization |
| T247 | 905-911 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T248 | 967-971 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T249 | 1055-1060 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | Organ |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T258 | 0-92 | Sentence | denotes | Table 7 Outcomes of patients with COVID-19-associated ARDS according to Aspergillus status. |
| T259 | 93-244 | Sentence | denotes | Outcomes All Patients (n = 45) No Aspergillosis (n = 30) Aspergillus Colonization (n = 8) Putative/Probable Invasive Aspergillosis (n = 7) p Value |
| T260 | 245-331 | Sentence | denotes | Duration of mechanical ventilation 17 (9–24) 17 (7–24) 18 (10–21) 18 (12–30) 0.66 |
| T261 | 332-412 | Sentence | denotes | Ventilator free days at day 28 11 (4–19) 11 (4–21) 10 (7–18) 10 (0–16) 0.64 |
| T262 | 413-486 | Sentence | denotes | Prone positioning ventilation 20 (44) 12 (46) 3 (37.5) 5 (71.4) 0.29 |
| T263 | 487-554 | Sentence | denotes | SOFA score on day 7 7 (5–11) 6 (5–10) 8 (7–10) 11 (10–12) 0.01 |
| T264 | 555-618 | Sentence | denotes | SOFA score on day 14 7 (2–10) 7 (2–9) 3 (1–7) 9 (2–12) 0.2 |
| T265 | 619-691 | Sentence | denotes | ICU length of stay 20 (12–27) 12 (11–23) 23 (16–51) 27 (20–36) 0.02 |
| T266 | 692-745 | Sentence | denotes | Death in ICU 6 (13.3) 4 (13.3) 0 2 * (28.6) 0.27 |
| T267 | 746-804 | Sentence | denotes | Data are presented as median (IQR: interquartiles), n (%). |
| T268 | 805-996 | Sentence | denotes | P values comparing Aspergillus colonization, invasive aspergillosis and no aspergillosis groups are tested by Kruskal Wallis (continuous variables) or Chi-square test (categorical variables). |
| T269 | 997-1016 | Sentence | denotes | Abbreviations: ICU: |
| T270 | 1017-1043 | Sentence | denotes | Intensive Care Unit, SOFA: |
| T271 | 1044-1109 | Sentence | denotes | Sequential Organ Failure Assessment, * 1 putative and 1 probable. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 674 | 107-115 | Species | denotes | Patients | Tax:9606 |
| 675 | 153-164 | Species | denotes | Aspergillus | Tax:746128 |
| 676 | 205-227 | Disease | denotes | Invasive Aspergillosis | MESH:D055744 |
| 677 | 692-697 | Disease | denotes | Death | MESH:D003643 |
| 682 | 21-29 | Species | denotes | patients | Tax:9606 |
| 683 | 73-84 | Species | denotes | Aspergillus | Tax:746128 |
| 684 | 35-43 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 685 | 55-59 | Disease | denotes | ARDS | MESH:D012128 |
| 689 | 824-835 | Species | denotes | Aspergillus | Tax:746128 |
| 690 | 850-872 | Disease | denotes | invasive aspergillosis | MESH:D055744 |
| 691 | 880-893 | Disease | denotes | aspergillosis | MESH:D001228 |