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PMC:7558333 / 24330-26952 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T54 182-194 Body_part denotes Colonization http://purl.org/sig/ont/fma/fma14543
T55 947-953 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T56 1094-1099 Body_part denotes Heart http://purl.org/sig/ont/fma/fma7088
T57 1252-1268 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T58 1264-1268 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T59 1349-1359 Body_part denotes Neutrophil http://purl.org/sig/ont/fma/fma62860
T60 1440-1450 Body_part denotes Lymphocyte http://purl.org/sig/ont/fma/fma62863
T61 1541-1551 Body_part denotes Hemoglobin http://purl.org/sig/ont/fma/fma62293
T62 1628-1636 Body_part denotes Platelet http://purl.org/sig/ont/fma/fma62851
T63 1898-1905 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T64 2485-2489 Body_part denotes Body http://purl.org/sig/ont/fma/fma256135
T65 2566-2571 Body_part denotes Organ http://purl.org/sig/ont/fma/fma67498

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T37 947-953 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T38 1094-1099 Body_part denotes Heart http://purl.obolibrary.org/obo/UBERON_0000948
T39 1258-1263 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T40 2566-2571 Body_part denotes Organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T136 146-159 Disease denotes Aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T137 222-244 Disease denotes Invasive Aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T138 231-244 Disease denotes Aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T139 618-626 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T140 673-685 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T141 738-744 Disease denotes cancer http://purl.obolibrary.org/obo/MONDO_0004992
T142 822-844 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T143 886-923 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T144 906-923 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T145 939-961 Disease denotes Chronic kidney disease http://purl.obolibrary.org/obo/MONDO_0005300
T146 947-961 Disease denotes kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T148 2318-2340 Disease denotes invasive aspergillosis http://purl.obolibrary.org/obo/MONDO_0000240
T149 2327-2340 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657
T150 2348-2361 Disease denotes aspergillosis http://purl.obolibrary.org/obo/MONDO_0005657

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T170 138-140 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T171 182-194 http://purl.obolibrary.org/obo/UBERON_0001155 denotes Colonization
T172 281-283 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T173 305-307 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T174 422-424 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T175 456-458 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T176 857-864 http://purl.obolibrary.org/obo/CLO_0054060 denotes (10) 2
T177 947-953 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T178 947-953 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T179 947-953 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T180 1094-1099 http://purl.obolibrary.org/obo/UBERON_0000948 denotes Heart
T181 1094-1099 http://purl.obolibrary.org/obo/UBERON_0007100 denotes Heart
T182 1094-1099 http://purl.obolibrary.org/obo/UBERON_0015228 denotes Heart
T183 1094-1099 http://www.ebi.ac.uk/efo/EFO_0000815 denotes Heart
T184 1127-1129 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T185 1155-1158 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T186 1193-1195 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T187 1241-1244 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T188 1258-1263 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T189 1264-1268 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T190 1607-1609 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T191 1697-1700 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T192 1774-1778 http://purl.obolibrary.org/obo/CLO_0001442 denotes 6–12
T193 1781-1783 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T194 1836-1839 http://purl.obolibrary.org/obo/CLO_0001002 denotes 162
T195 1842-1844 http://purl.obolibrary.org/obo/CLO_0054055 denotes 71
T196 1955-1958 http://purl.obolibrary.org/obo/CLO_0054060 denotes 102
T197 2017-2020 http://purl.obolibrary.org/obo/CLO_0054057 denotes 181
T198 2043-2045 http://purl.obolibrary.org/obo/CLO_0001527 denotes 94
T199 2107-2109 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T200 2135-2137 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T201 2174-2176 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T202 2266-2274 http://purl.obolibrary.org/obo/CLO_0008192 denotes n (%). P
T203 2304-2316 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T204 2373-2379 http://purl.obolibrary.org/obo/UBERON_0000473 denotes tested
T205 2435-2439 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T206 2566-2571 http://purl.obolibrary.org/obo/UBERON_0003103 denotes Organ
T207 2598-2606 http://purl.obolibrary.org/obo/UBERON_0001637 denotes arterial
T208 2598-2606 http://www.ebi.ac.uk/efo/EFO_0000814 denotes arterial

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T11 673-685 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T12 738-744 Phenotype denotes cancer http://purl.obolibrary.org/obo/HP_0002664
T13 822-844 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T14 886-923 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T15 939-961 Phenotype denotes Chronic kidney disease http://purl.obolibrary.org/obo/HP_0012622

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T190 0-90 Sentence denotes Table 3 Demographic characteristics and clinical and biological baseline characteristics.
T191 91-261 Sentence denotes Demographic Characteristics All Patients (n = 45) No Aspergillosis (n = 30) Aspergillus Colonization (n = 8) Putative/Probable Invasive Aspergillosis (n = 7) p Value
T192 262-326 Sentence denotes Age, years 60 (53–71) 59 (54–68) 53 (51–71) 70 (63–75) 0.14
T193 327-416 Sentence denotes SexMen Women 32 (71.1)13 (28.9) 21 (70)9 (30) 7 (87.5)1 (12.5) 4 (57.1)3 (42.8) 0.42
T194 417-494 Sentence denotes BMI 27 (24.4–31.4) 27.5 (24.7–32.3) 27 (25.2–30.7) 25.2 (23.2–26.4) 0.99
T195 495-547 Sentence denotes Current smoking 3 (6.7) 2 (4.4) 0 1 (12.5) 0.54
T196 548-569 Sentence denotes Coexisting conditions
T197 570-617 Sentence denotes Any 31 (68.9) 19 (63) 6 (75) 6 (85.7) 0.47
T198 618-672 Sentence denotes Diabetes 17 (37.8) 12 (40) 3 (37.5) 2 (28.6) 0.74
T199 673-731 Sentence denotes Hypertension 15 (33.3) 7 (23.3) 5 (62.5) 3 (42.9) 0.1
T200 732-774 Sentence denotes Solid cancer 1 (2.2) 1 (3.3) 0 0 0.77
T201 775-821 Sentence denotes Hemopathy 2 (4.4) 1 (3.3) 0 1 (14.3) 0.54
T202 822-885 Sentence denotes Cardiovascular disease 3 (6.7) 3 (10) 2 (25) 2 (28.6) 0.34
T203 886-938 Sentence denotes Chronic obstructive pulmonary disease 0 0 0 0 -
T204 939-1005 Sentence denotes Chronic kidney disease 4 (8.9) 2 (6.7) 1 (12.5) 1 (14.3) 0.83
T205 1006-1093 Sentence denotes Temperature (°C) 38 (37–38.9) 37.5 (337–38.4) 38.2 (37.9–39) 38.2 (37.7–38.8) 0.29
T206 1094-1173 Sentence denotes Heart rate (/min) 100 (80–110) 94 (80–110) 104 (100–110) 102 (85–119) 0.63
T207 1174-1251 Sentence denotes Systolic pressure 94 (87–107) 93 (85–105) 103 (100–109) 90 (82–102) 0.34
T208 1252-1348 Sentence denotes White blood cell count (109/L) 9.8 (6.8–12.9) 9.7 (6.9–13) 9.9 (7–10.7) 9.9 (6.7–12.9) 0.97
T209 1349-1439 Sentence denotes Neutrophil count (109/L) 7.9 (4.5–10.8) 7 (4.9–10.5) 8.5 (5.2–8.6) 5.6 (3.5–10.4) 0.8
T210 1440-1540 Sentence denotes Lymphocyte count (109/L) 0.81 (0.58–1.11) 0.83 (0.53–1.14) 0.7 (0.63–1.1) 0.72 (0.58–0.81) 0.87
T211 1541-1627 Sentence denotes Hemoglobin (g/L) 10.8 (9.5–12.5) 10 (9.4–12) 11.8 (10.6–13.6) 11 (10.5–13.6) 0.12
T212 1628-1716 Sentence denotes Platelet count (109/L) 264 (194–357) 282 (220–364) 244 (184–347) 162 (129–262) 0.12
T213 1717-1807 Sentence denotes Total bilirubin concentration (µmol/L) 8 (5.5–12) 8.5 (6–12) 11 (9–13) 7 (5.5–8) 0.72
T214 1808-1886 Sentence denotes Creatinine (µmol/L) 81 (53–162) 71 (51–109) 81 (73–173) 101 (82–184) 0.15
T215 1887-1984 Sentence denotes C-reactive protein (CRP) (mg/L) 157 (112–263) 155 (112–265) 112 (102–131) 112 (109–178) 0.03
T216 1985-2070 Sentence denotes Ratio of PaO2 to FiO2 152 (100–181) 164 (107–214) 120 (94–214) 136 (72–155) 0.25
T217 2071-2147 Sentence denotes SAPS II score on day 1 42 (31–57) 35 (30–58) 42 (21–55) 43 (35–82) 0.55
T218 2148-2213 Sentence denotes SOFA score on day 1 7 (2–11) 7 (4–10) 5 (2–10) 9 (2–12) 0.76
T219 2214-2272 Sentence denotes Data are presented as median (IQR: interquartiles), n (%).
T220 2273-2464 Sentence denotes P values comparing Aspergillus colonization, invasive aspergillosis and no aspergillosis groups are tested by Kruskal–Wallis (continuous variables) or Chi-square test (categorical variables).
T221 2465-2484 Sentence denotes Abbreviations: BMI:
T222 2485-2510 Sentence denotes Body mass index; SAPS II:
T223 2511-2554 Sentence denotes Simplified Acute Physiology Score II; SOFA:
T224 2555-2622 Sentence denotes Sequential Organ Failure Assessment, PaO2: arterial oxygen tension.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
598 1887-1905 Gene denotes C-reactive protein Gene:1401
599 1907-1910 Gene denotes CRP Gene:1401
600 124-132 Species denotes Patients Tax:9606
601 334-339 Species denotes Women Tax:9606
602 170-181 Species denotes Aspergillus Tax:746128
603 1808-1818 Chemical denotes Creatinine MESH:D003404
604 222-244 Disease denotes Invasive Aspergillosis MESH:D055744
605 618-626 Disease denotes Diabetes MESH:D003920
606 673-685 Disease denotes Hypertension MESH:D006973
607 738-744 Disease denotes cancer MESH:D009369
608 775-784 Disease denotes Hemopathy
609 822-844 Disease denotes Cardiovascular disease MESH:D002318
610 886-923 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
611 939-961 Disease denotes Chronic kidney disease MESH:D051436
616 2292-2303 Species denotes Aspergillus Tax:746128
617 2607-2613 Chemical denotes oxygen MESH:D010100
618 2318-2340 Disease denotes invasive aspergillosis MESH:D055744
619 2348-2361 Disease denotes aspergillosis MESH:D001228