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PMC:7558333 / 22183-23929 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T50 577-582 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T51 1313-1321 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T52 1597-1602 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T35 577-582 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T36 1597-1602 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T126 616-618 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T127 1560-1562 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T128 1579-1581 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T129 1650-1652 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T159 110-111 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T160 331-343 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T161 552-553 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T162 577-582 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T163 577-582 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T164 1322-1329 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T165 1597-1602 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T166 1597-1602 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T19 1614-1616 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T20 1728-1730 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T21 1732-1745 GlycoEpitope denotes galactomannan http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T158 0-138 Sentence denotes Table 1 Diagnostic criteria of the AspICU clinical algorithm according to Blot et al., 2012, and proposal of a modified AspICU algorithm.
T159 139-316 Sentence denotes Classification AspICU According to Blot et al., 2012 [3] AspICU Algorithm Incorporating PCR Modified AspICU Algorithm Incorporating PCR, Serology and Angioinvasion Biomarkers
T160 317-592 Sentence denotes Definition of colonization Aspergillus-positive culture endotracheal aspirate alone Aspergillus-positive culture/PCR endotracheal aspirate alone Aspergillus-positive culture/PCR endotracheal aspirate in one sample, not confirmed on a second sample or using blood biomarker
T161 593-639 Sentence denotes Definition of putative IA >1 criterion among:
T162 640-642 Sentence denotes 1.
T163 643-696 Sentence denotes Aspergillus-positive culture endotracheal aspirate 2.
T164 697-725 Sentence denotes Compatible clinical signs 3.
T165 726-783 Sentence denotes Abnormal thoracic medical imaging on CT scan or X-ray 4a.
T166 784-808 Sentence denotes Host risk factors Or 4b.
T167 809-917 Sentence denotes Semiquantitative Aspergillus-positive culture of BAL fluid + positive direct microscopy >1 criterion among:
T168 918-920 Sentence denotes 1.
T169 921-978 Sentence denotes Aspergillus-positive culture/PCR endotracheal aspirate 2.
T170 979-1007 Sentence denotes Compatible clinical signs 3.
T171 1008-1065 Sentence denotes Abnormal thoracic medical imaging on CT scan or X-ray 4a.
T172 1066-1090 Sentence denotes Host risk factors Or 4b.
T173 1091-1203 Sentence denotes Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy >1 criterion among:
T174 1204-1206 Sentence denotes 1.
T175 1207-1332 Sentence denotes Aspergillus-positive culture/PCR endotracheal aspirate in repeated samples with negative anti-Aspergillus antibody testing 2.
T176 1333-1361 Sentence denotes Compatible clinical signs 3.
T177 1362-1419 Sentence denotes Abnormal thoracic medical imaging on CT scan or X-ray 4a.
T178 1420-1444 Sentence denotes Host risk factors Or 4b.
T179 1445-1536 Sentence denotes Semiquantitative Aspergillus-positive culture/PCR of BAL fluid + positive direct microscopy
T180 1537-1628 Sentence denotes Definition of probable IA - - Putative IA + one positive blood biomarker (GM and/or PCR)
T181 1629-1727 Sentence denotes Definition of proven IA Positive histopathology Positive histopathology Positive histopathology
T182 1728-1746 Sentence denotes GM: galactomannan.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
562 345-356 Species denotes Aspergillus Tax:746128
563 403-414 Species denotes Aspergillus Tax:746128
564 465-476 Species denotes Aspergillus Tax:746128
565 643-654 Species denotes Aspergillus Tax:746128
566 826-837 Species denotes Aspergillus Tax:746128
567 921-932 Species denotes Aspergillus Tax:746128
568 1108-1119 Species denotes Aspergillus Tax:746128
569 1207-1218 Species denotes Aspergillus Tax:746128
570 1301-1312 Species denotes Aspergillus Tax:746128
571 1462-1473 Species denotes Aspergillus Tax:746128
574 1728-1730 Chemical denotes GM MESH:C012990
575 1732-1745 Chemical denotes galactomannan MESH:C012990