PMC:7558333 / 16069-16874 JSONTXT

{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7558333","sourcedb":"PMC","sourceid":"7558333","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7558333","text":"The breaking news of SARS-CoV-2 co-infection urges the need for a critical analysis of the criteria of AspICU algorithm. Indeed, COVID-19 patients, particularly ARDS patients with mechanical ventilation, present with compatible clinical signs as depicted by the algorithm (refractory fever, pleuritic chest pain and rub, dyspnea, hemoptysis and worsening respiratory insufficiency, see [3] for full description) and CT-scan signs are hard to interpret because of COVID-19 CT-scan presentation, leading to absence or very poor discrimination between Aspergillus colonization and infection [19,23]. As a result, IA during COVID-19 has been reported with a possible overestimated high prevalence (until 30%), as favorable outcomes have been described in patients who did not receive any antifungal treatment.","tracks":[{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T37","span":{"begin":301,"end":306},"obj":"Body_part"}],"attributes":[{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma9576"},{"subj":"T37","pred":"source","obj":"LitCovid-PD-FMA-UBERON"}]},{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T25","span":{"begin":301,"end":306},"obj":"Body_part"}],"attributes":[{"id":"A25","pred":"uberon_id","subj":"T25","obj":"http://purl.obolibrary.org/obo/UBERON_0001443"},{"subj":"T25","pred":"source","obj":"LitCovid-PD-UBERON"}]},{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T90","span":{"begin":21,"end":29},"obj":"Disease"},{"id":"T91","span":{"begin":35,"end":44},"obj":"Disease"},{"id":"T92","span":{"begin":129,"end":137},"obj":"Disease"},{"id":"T93","span":{"begin":161,"end":165},"obj":"Disease"},{"id":"T94","span":{"begin":463,"end":471},"obj":"Disease"},{"id":"T95","span":{"begin":578,"end":587},"obj":"Disease"},{"id":"T96","span":{"begin":610,"end":612},"obj":"Disease"},{"id":"T97","span":{"begin":620,"end":628},"obj":"Disease"}],"attributes":[{"id":"A90","pred":"mondo_id","subj":"T90","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A91","pred":"mondo_id","subj":"T91","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A92","pred":"mondo_id","subj":"T92","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A93","pred":"mondo_id","subj":"T93","obj":"http://purl.obolibrary.org/obo/MONDO_0006502"},{"id":"A94","pred":"mondo_id","subj":"T94","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A95","pred":"mondo_id","subj":"T95","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A96","pred":"mondo_id","subj":"T96","obj":"http://purl.obolibrary.org/obo/MONDO_0000240"},{"id":"A97","pred":"mondo_id","subj":"T97","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"subj":"T90","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T91","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T92","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T93","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T94","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T95","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T96","pred":"source","obj":"LitCovid-PD-MONDO"},{"subj":"T97","pred":"source","obj":"LitCovid-PD-MONDO"}]},{"project":"LitCovid-PD-CLO","denotations":[{"id":"T115","span":{"begin":64,"end":65},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T116","span":{"begin":301,"end":306},"obj":"http://www.ebi.ac.uk/efo/EFO_0000965"},{"id":"T117","span":{"begin":561,"end":573},"obj":"http://purl.obolibrary.org/obo/UBERON_0001155"},{"id":"T118","span":{"begin":600,"end":601},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T119","span":{"begin":629,"end":632},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T120","span":{"begin":652,"end":653},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T115","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T116","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T117","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T118","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T119","pred":"source","obj":"LitCovid-PD-CLO"},{"subj":"T120","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-PD-HP","denotations":[{"id":"T6","span":{"begin":284,"end":289},"obj":"Phenotype"},{"id":"T7","span":{"begin":301,"end":311},"obj":"Phenotype"},{"id":"T8","span":{"begin":321,"end":328},"obj":"Phenotype"},{"id":"T9","span":{"begin":330,"end":340},"obj":"Phenotype"},{"id":"T10","span":{"begin":355,"end":380},"obj":"Phenotype"}],"attributes":[{"id":"A6","pred":"hp_id","subj":"T6","obj":"http://purl.obolibrary.org/obo/HP_0001945"},{"id":"A7","pred":"hp_id","subj":"T7","obj":"http://purl.obolibrary.org/obo/HP_0100749"},{"id":"A8","pred":"hp_id","subj":"T8","obj":"http://purl.obolibrary.org/obo/HP_0002094"},{"id":"A9","pred":"hp_id","subj":"T9","obj":"http://purl.obolibrary.org/obo/HP_0002105"},{"id":"A10","pred":"hp_id","subj":"T10","obj":"http://purl.obolibrary.org/obo/HP_0002093"},{"subj":"T6","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T7","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T8","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T9","pred":"source","obj":"LitCovid-PD-HP"},{"subj":"T10","pred":"source","obj":"LitCovid-PD-HP"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T122","span":{"begin":0,"end":120},"obj":"Sentence"},{"id":"T123","span":{"begin":121,"end":596},"obj":"Sentence"},{"id":"T124","span":{"begin":597,"end":805},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T122","pred":"source","obj":"LitCovid-sentences"},{"subj":"T123","pred":"source","obj":"LitCovid-sentences"},{"subj":"T124","pred":"source","obj":"LitCovid-sentences"}]},{"project":"LitCovid-PubTator","denotations":[{"id":"368","span":{"begin":21,"end":31},"obj":"Species"},{"id":"369","span":{"begin":138,"end":146},"obj":"Species"},{"id":"370","span":{"begin":166,"end":174},"obj":"Species"},{"id":"371","span":{"begin":751,"end":759},"obj":"Species"},{"id":"372","span":{"begin":549,"end":560},"obj":"Species"},{"id":"373","span":{"begin":35,"end":44},"obj":"Disease"},{"id":"374","span":{"begin":129,"end":137},"obj":"Disease"},{"id":"375","span":{"begin":161,"end":165},"obj":"Disease"},{"id":"376","span":{"begin":284,"end":289},"obj":"Disease"},{"id":"377","span":{"begin":291,"end":311},"obj":"Disease"},{"id":"378","span":{"begin":321,"end":328},"obj":"Disease"},{"id":"379","span":{"begin":330,"end":340},"obj":"Disease"},{"id":"380","span":{"begin":355,"end":380},"obj":"Disease"},{"id":"381","span":{"begin":463,"end":471},"obj":"Disease"},{"id":"382","span":{"begin":578,"end":587},"obj":"Disease"},{"id":"383","span":{"begin":620,"end":628},"obj":"Disease"}],"attributes":[{"id":"A368","pred":"tao:has_database_id","subj":"368","obj":"Tax:2697049"},{"id":"A369","pred":"tao:has_database_id","subj":"369","obj":"Tax:9606"},{"id":"A370","pred":"tao:has_database_id","subj":"370","obj":"Tax:9606"},{"id":"A371","pred":"tao:has_database_id","subj":"371","obj":"Tax:9606"},{"id":"A372","pred":"tao:has_database_id","subj":"372","obj":"Tax:746128"},{"id":"A373","pred":"tao:has_database_id","subj":"373","obj":"MESH:D007239"},{"id":"A374","pred":"tao:has_database_id","subj":"374","obj":"MESH:C000657245"},{"id":"A375","pred":"tao:has_database_id","subj":"375","obj":"MESH:D012128"},{"id":"A376","pred":"tao:has_database_id","subj":"376","obj":"MESH:D005334"},{"id":"A377","pred":"tao:has_database_id","subj":"377","obj":"MESH:D002637"},{"id":"A378","pred":"tao:has_database_id","subj":"378","obj":"MESH:D004417"},{"id":"A379","pred":"tao:has_database_id","subj":"379","obj":"MESH:D006469"},{"id":"A380","pred":"tao:has_database_id","subj":"380","obj":"MESH:D012131"},{"id":"A381","pred":"tao:has_database_id","subj":"381","obj":"MESH:C000657245"},{"id":"A382","pred":"tao:has_database_id","subj":"382","obj":"MESH:D007239"},{"id":"A383","pred":"tao:has_database_id","subj":"383","obj":"MESH:C000657245"},{"subj":"368","pred":"source","obj":"LitCovid-PubTator"},{"subj":"369","pred":"source","obj":"LitCovid-PubTator"},{"subj":"370","pred":"source","obj":"LitCovid-PubTator"},{"subj":"371","pred":"source","obj":"LitCovid-PubTator"},{"subj":"372","pred":"source","obj":"LitCovid-PubTator"},{"subj":"373","pred":"source","obj":"LitCovid-PubTator"},{"subj":"374","pred":"source","obj":"LitCovid-PubTator"},{"subj":"375","pred":"source","obj":"LitCovid-PubTator"},{"subj":"376","pred":"source","obj":"LitCovid-PubTator"},{"subj":"377","pred":"source","obj":"LitCovid-PubTator"},{"subj":"378","pred":"source","obj":"LitCovid-PubTator"},{"subj":"379","pred":"source","obj":"LitCovid-PubTator"},{"subj":"380","pred":"source","obj":"LitCovid-PubTator"},{"subj":"381","pred":"source","obj":"LitCovid-PubTator"},{"subj":"382","pred":"source","obj":"LitCovid-PubTator"},{"subj":"383","pred":"source","obj":"LitCovid-PubTator"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}]},{"project":"2_test","denotations":[{"id":"32664423-22517788-60101708","span":{"begin":387,"end":388},"obj":"22517788"},{"id":"32664423-32339350-60101709","span":{"begin":589,"end":591},"obj":"32339350"},{"id":"32664423-32488446-60101710","span":{"begin":592,"end":594},"obj":"32488446"}],"attributes":[{"subj":"32664423-22517788-60101708","pred":"source","obj":"2_test"},{"subj":"32664423-32339350-60101709","pred":"source","obj":"2_test"},{"subj":"32664423-32488446-60101710","pred":"source","obj":"2_test"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-FMA-UBERON","color":"#ecb293","default":true},{"id":"LitCovid-PD-UBERON","color":"#9893ec"},{"id":"LitCovid-PD-MONDO","color":"#a8ec93"},{"id":"LitCovid-PD-CLO","color":"#ec93c2"},{"id":"LitCovid-PD-HP","color":"#93dcec"},{"id":"LitCovid-sentences","color":"#ece293"},{"id":"LitCovid-PubTator","color":"#c893ec"},{"id":"2_test","color":"#93ecae"}]}]}}