PMC:7558333 / 16069-16874
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T37 | 301-306 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T25 | 301-306 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T90 | 21-29 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T91 | 35-44 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T92 | 129-137 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T93 | 161-165 | Disease | denotes | ARDS | http://purl.obolibrary.org/obo/MONDO_0006502 |
| T94 | 463-471 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T95 | 578-587 | Disease | denotes | infection | http://purl.obolibrary.org/obo/MONDO_0005550 |
| T96 | 610-612 | Disease | denotes | IA | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T97 | 620-628 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T115 | 64-65 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T116 | 301-306 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T117 | 561-573 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonization |
| T118 | 600-601 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T119 | 629-632 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T120 | 652-653 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T6 | 284-289 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T7 | 301-311 | Phenotype | denotes | chest pain | http://purl.obolibrary.org/obo/HP_0100749 |
| T8 | 321-328 | Phenotype | denotes | dyspnea | http://purl.obolibrary.org/obo/HP_0002094 |
| T9 | 330-340 | Phenotype | denotes | hemoptysis | http://purl.obolibrary.org/obo/HP_0002105 |
| T10 | 355-380 | Phenotype | denotes | respiratory insufficiency | http://purl.obolibrary.org/obo/HP_0002093 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T122 | 0-120 | Sentence | denotes | The breaking news of SARS-CoV-2 co-infection urges the need for a critical analysis of the criteria of AspICU algorithm. |
| T123 | 121-596 | Sentence | denotes | Indeed, COVID-19 patients, particularly ARDS patients with mechanical ventilation, present with compatible clinical signs as depicted by the algorithm (refractory fever, pleuritic chest pain and rub, dyspnea, hemoptysis and worsening respiratory insufficiency, see [3] for full description) and CT-scan signs are hard to interpret because of COVID-19 CT-scan presentation, leading to absence or very poor discrimination between Aspergillus colonization and infection [19,23]. |
| T124 | 597-805 | Sentence | denotes | As a result, IA during COVID-19 has been reported with a possible overestimated high prevalence (until 30%), as favorable outcomes have been described in patients who did not receive any antifungal treatment. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 368 | 21-31 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 369 | 138-146 | Species | denotes | patients | Tax:9606 |
| 370 | 166-174 | Species | denotes | patients | Tax:9606 |
| 371 | 751-759 | Species | denotes | patients | Tax:9606 |
| 372 | 549-560 | Species | denotes | Aspergillus | Tax:746128 |
| 373 | 35-44 | Disease | denotes | infection | MESH:D007239 |
| 374 | 129-137 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 375 | 161-165 | Disease | denotes | ARDS | MESH:D012128 |
| 376 | 284-289 | Disease | denotes | fever | MESH:D005334 |
| 377 | 291-311 | Disease | denotes | pleuritic chest pain | MESH:D002637 |
| 378 | 321-328 | Disease | denotes | dyspnea | MESH:D004417 |
| 379 | 330-340 | Disease | denotes | hemoptysis | MESH:D006469 |
| 380 | 355-380 | Disease | denotes | respiratory insufficiency | MESH:D012131 |
| 381 | 463-471 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 382 | 578-587 | Disease | denotes | infection | MESH:D007239 |
| 383 | 620-628 | Disease | denotes | COVID-19 | MESH:C000657245 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32664423-22517788-60101708 | 387-388 | 22517788 | denotes | 3 |
| 32664423-32339350-60101709 | 589-591 | 32339350 | denotes | 19 |
| 32664423-32488446-60101710 | 592-594 | 32488446 | denotes | 23 |