PMC:7558333 / 12151-13436
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T30 | 428-433 | Body_part | denotes | chest | http://purl.org/sig/ont/fma/fma9576 |
| T31 | 676-681 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
| T32 | 860-877 | Body_part | denotes | respiratory tract | http://purl.org/sig/ont/fma/fma265130 |
| T33 | 1006-1014 | Body_part | denotes | antibody | http://purl.org/sig/ont/fma/fma62871 |
| T34 | 1221-1226 | Body_part | denotes | serum | http://purl.org/sig/ont/fma/fma63083 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T20 | 428-433 | Body_part | denotes | chest | http://purl.obolibrary.org/obo/UBERON_0001443 |
| T21 | 676-681 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
| T22 | 860-877 | Body_part | denotes | respiratory tract | http://purl.obolibrary.org/obo/UBERON_0000065 |
| T23 | 1221-1226 | Body_part | denotes | serum | http://purl.obolibrary.org/obo/UBERON_0001977 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T58 | 195-197 | Disease | denotes | IA | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T59 | 276-278 | Disease | denotes | IA | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T60 | 1109-1111 | Disease | denotes | IA | http://purl.obolibrary.org/obo/MONDO_0000240 |
| T61 | 1168-1170 | Disease | denotes | IA | http://purl.obolibrary.org/obo/MONDO_0000240 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T86 | 43-45 | http://purl.obolibrary.org/obo/CLO_0053799 | denotes | 45 |
| T87 | 184-185 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T88 | 199-201 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
| T89 | 357-366 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonized |
| T90 | 428-433 | http://www.ebi.ac.uk/efo/EFO_0000965 | denotes | chest |
| T91 | 505-506 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T92 | 609-618 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonized |
| T93 | 646-647 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T94 | 758-759 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T95 | 823-824 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T96 | 943-944 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T97 | 953-965 | http://purl.obolibrary.org/obo/UBERON_0001155 | denotes | colonization |
| T98 | 1015-1026 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | testing was |
| T99 | 1182-1183 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T5 | 514-532 | http://purl.obolibrary.org/obo/GO_0016046 | denotes | detection of fungi |
LitCovid-PD-GlycoEpitope
| Id | Subject | Object | Predicate | Lexical cue | glyco_epitope_db_id |
|---|---|---|---|---|---|
| T13 | 660-662 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
| T14 | 1238-1240 | GlycoEpitope | denotes | GM | http://www.glycoepitope.jp/epitopes/EP0510 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T98 | 0-100 | Sentence | denotes | Table 6 presents the classification of the 45 patients using original or modified AspICU algorithms. |
| T99 | 101-218 | Sentence | denotes | It appears that using an AspICU algorithm, nine patients were considered as having a putative IA (22% of the cohort). |
| T100 | 219-452 | Sentence | denotes | When including PCR, the number of patients with putative IA would increase from 9 to 15 (33%) patients, while most patients might be only colonized because all presented compatible clinical signs and abnormal chest CT scan (Table 5). |
| T101 | 453-619 | Sentence | denotes | Regarding Aspergillus detection, eight patients had a single detection of fungi using culture and/or PCR in respiratory samples and thus were classified as colonized. |
| T102 | 620-782 | Sentence | denotes | One of these patients had a concomitant GM detection in serum (index = 0.551), was not treated and is still alive, thus was considered as a false positive result. |
| T103 | 783-921 | Sentence | denotes | Finally, seven (16%) patients presented a heavy burden of Aspergillus in the respiratory tract with repeated positive cultures and/or PCR. |
| T104 | 922-1065 | Sentence | denotes | In order to rule out a chronic colonization before the episode, an anti-Aspergillus antibody testing was performed and showed negative results. |
| T105 | 1066-1285 | Sentence | denotes | These patients were classified as putative IA, and three of them could even be considered as probable IA because of a positive biomarker of angioinvasion (serum PCR and/or GM) in agreement with EORTC/MSG classification. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 259 | 46-54 | Species | denotes | patients | Tax:9606 |
| 260 | 149-157 | Species | denotes | patients | Tax:9606 |
| 261 | 253-261 | Species | denotes | patients | Tax:9606 |
| 262 | 313-321 | Species | denotes | patients | Tax:9606 |
| 263 | 334-342 | Species | denotes | patients | Tax:9606 |
| 264 | 492-500 | Species | denotes | patients | Tax:9606 |
| 265 | 633-641 | Species | denotes | patients | Tax:9606 |
| 266 | 804-812 | Species | denotes | patients | Tax:9606 |
| 267 | 1072-1080 | Species | denotes | patients | Tax:9606 |
| 268 | 463-474 | Species | denotes | Aspergillus | Tax:746128 |
| 269 | 841-852 | Species | denotes | Aspergillus | Tax:746128 |
| 270 | 994-1005 | Species | denotes | Aspergillus | Tax:746128 |
| 271 | 660-662 | Chemical | denotes | GM | MESH:C012990 |