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PMC:7558333 / 12151-13436 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T30 428-433 Body_part denotes chest http://purl.org/sig/ont/fma/fma9576
T31 676-681 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083
T32 860-877 Body_part denotes respiratory tract http://purl.org/sig/ont/fma/fma265130
T33 1006-1014 Body_part denotes antibody http://purl.org/sig/ont/fma/fma62871
T34 1221-1226 Body_part denotes serum http://purl.org/sig/ont/fma/fma63083

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T20 428-433 Body_part denotes chest http://purl.obolibrary.org/obo/UBERON_0001443
T21 676-681 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977
T22 860-877 Body_part denotes respiratory tract http://purl.obolibrary.org/obo/UBERON_0000065
T23 1221-1226 Body_part denotes serum http://purl.obolibrary.org/obo/UBERON_0001977

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T58 195-197 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T59 276-278 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T60 1109-1111 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240
T61 1168-1170 Disease denotes IA http://purl.obolibrary.org/obo/MONDO_0000240

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T86 43-45 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45
T87 184-185 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 199-201 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T89 357-366 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonized
T90 428-433 http://www.ebi.ac.uk/efo/EFO_0000965 denotes chest
T91 505-506 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 609-618 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonized
T93 646-647 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 758-759 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 823-824 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 943-944 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T97 953-965 http://purl.obolibrary.org/obo/UBERON_0001155 denotes colonization
T98 1015-1026 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing was
T99 1182-1183 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T5 514-532 http://purl.obolibrary.org/obo/GO_0016046 denotes detection of fungi

LitCovid-PD-GlycoEpitope

Id Subject Object Predicate Lexical cue glyco_epitope_db_id
T13 660-662 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510
T14 1238-1240 GlycoEpitope denotes GM http://www.glycoepitope.jp/epitopes/EP0510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T98 0-100 Sentence denotes Table 6 presents the classification of the 45 patients using original or modified AspICU algorithms.
T99 101-218 Sentence denotes It appears that using an AspICU algorithm, nine patients were considered as having a putative IA (22% of the cohort).
T100 219-452 Sentence denotes When including PCR, the number of patients with putative IA would increase from 9 to 15 (33%) patients, while most patients might be only colonized because all presented compatible clinical signs and abnormal chest CT scan (Table 5).
T101 453-619 Sentence denotes Regarding Aspergillus detection, eight patients had a single detection of fungi using culture and/or PCR in respiratory samples and thus were classified as colonized.
T102 620-782 Sentence denotes One of these patients had a concomitant GM detection in serum (index = 0.551), was not treated and is still alive, thus was considered as a false positive result.
T103 783-921 Sentence denotes Finally, seven (16%) patients presented a heavy burden of Aspergillus in the respiratory tract with repeated positive cultures and/or PCR.
T104 922-1065 Sentence denotes In order to rule out a chronic colonization before the episode, an anti-Aspergillus antibody testing was performed and showed negative results.
T105 1066-1285 Sentence denotes These patients were classified as putative IA, and three of them could even be considered as probable IA because of a positive biomarker of angioinvasion (serum PCR and/or GM) in agreement with EORTC/MSG classification.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
259 46-54 Species denotes patients Tax:9606
260 149-157 Species denotes patients Tax:9606
261 253-261 Species denotes patients Tax:9606
262 313-321 Species denotes patients Tax:9606
263 334-342 Species denotes patients Tax:9606
264 492-500 Species denotes patients Tax:9606
265 633-641 Species denotes patients Tax:9606
266 804-812 Species denotes patients Tax:9606
267 1072-1080 Species denotes patients Tax:9606
268 463-474 Species denotes Aspergillus Tax:746128
269 841-852 Species denotes Aspergillus Tax:746128
270 994-1005 Species denotes Aspergillus Tax:746128
271 660-662 Chemical denotes GM MESH:C012990