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PMC:7556165 / 54021-56175 JSONTXT

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LitCovid-sample-PD-NCBITaxon

Id Subject Object Predicate Lexical cue ncbi_taxonomy_id
T332 48-56 Species denotes COVID-19 NCBItxid:2697049
T333 1025-1033 Species denotes COVID-19 NCBItxid:2697049
T334 1867-1875 Species denotes COVID-19 NCBItxid:2697049
T335 1962-1972 Species denotes SARS-CoV-2 NCBItxid:2697049
T336 1962-1966 Species denotes SARS NCBItxid:694009

LitCovid-sample-sentences

Id Subject Object Predicate Lexical cue
T336 0-240 Sentence denotes Epidemiological data consistently show that the COVID-19 patients at highest risk of a poor prognosis are males older than 60 years with chronic underlying diseases, mostly hypertension, cardiovascular diseases and type-2 diabetes mellitus.
T337 241-423 Sentence denotes Clinical reports have been rapidly delivered from all over the world, and meta-analyses assessing the prevalence of comorbidities and their impact on prognosis are already available.
T338 424-671 Sentence denotes A meta-analysis pooling data from seven studies following a total number of 1,576 infected patients from hospitals in China found that the most prevalent comorbidities were hypertension (21.1%), diabetes (9.7%), and cardiovascular diseases (8.4%).
T339 672-880 Sentence denotes These increased the risk of developing a more serious disease (i.e., requiring intensive care treatment), with odds ratios ranging from 2.4 (hypertension) to 3.4 (cardiovascular disease) (Yang et al., 2020b).
T340 881-1156 Sentence denotes These findings have been confirmed in the analysis performed by the Chinese Center for Disease Control and Prevention in a huge sample of 72314 COVID-19 cases (Epidemiology Working Group for Ncip Epidemic Response and Chinese Center for Disease Control and Prevention, 2020).
T341 1157-1310 Sentence denotes A study with 1591 Italian patients, similarly, reported a significant association between hypertension and mortality in Intensive Care Unit (63 vs. 40%).
T342 1311-1455 Sentence denotes This series reported an even higher prevalence of hypertension (49%), diabetes (17%), and cardiovascular disease (21%) (Grasselli et al., 2020).
T343 1456-1644 Sentence denotes Diabetes has been reported to predict the occurrence of ARDS (HR = 1.44), acute kidney injury (HR = 3.01), septic shock (HR = 1.95), and all-cause mortality (HR = 1.70) (Zhu et al., 2020).
T344 1645-1803 Sentence denotes Notably, poor glycemic control was significantly associated with worse clinical outcomes, namely multi-organ injuries and higher mortality (Zhu et al., 2020).
T345 1804-1885 Sentence denotes Obesity has also emerged as an important factor in determining COVID-19 severity.
T346 1886-2154 Sentence denotes Indeed, obesity was more frequent in patients admitted to critical care for SARS-CoV-2 as compared to the general population; moreover, the BMI was positively related to the need for invasive mechanical ventilation and mortality (Drucker, 2020; Simonnet et al., 2020).

LitCovid-sample-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T140 1536-1542 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T141 1748-1753 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-sample-Pubtator

Id Subject Object Predicate Lexical cue pubann:denotes
1536 57-65 Species denotes patients Tax:9606
1537 515-523 Species denotes patients Tax:9606
1538 1183-1191 Species denotes patients Tax:9606
1539 1923-1931 Species denotes patients Tax:9606
1540 1962-1972 Species denotes SARS-CoV-2 Tax:2697049
1541 48-56 Disease denotes COVID-19 MESH:C000657245
1542 173-185 Disease denotes hypertension MESH:D006973
1543 187-210 Disease denotes cardiovascular diseases MESH:D002318
1544 215-239 Disease denotes type-2 diabetes mellitus MESH:D003924
1545 506-514 Disease denotes infected MESH:D007239
1546 597-609 Disease denotes hypertension MESH:D006973
1547 619-627 Disease denotes diabetes MESH:D003920
1548 640-663 Disease denotes cardiovascular diseases MESH:D002318
1549 813-825 Disease denotes hypertension MESH:D006973
1550 835-857 Disease denotes cardiovascular disease MESH:D002318
1551 1025-1033 Disease denotes COVID-19 MESH:C000657245
1552 1247-1259 Disease denotes hypertension MESH:D006973
1553 1264-1273 Disease denotes mortality MESH:D003643
1554 1361-1373 Disease denotes hypertension MESH:D006973
1555 1381-1389 Disease denotes diabetes MESH:D003920
1556 1401-1423 Disease denotes cardiovascular disease MESH:D002318
1557 1456-1464 Disease denotes Diabetes MESH:D003920
1558 1512-1516 Disease denotes ARDS MESH:D012128
1559 1530-1549 Disease denotes acute kidney injury MESH:D058186
1560 1563-1575 Disease denotes septic shock MESH:D012772
1561 1603-1612 Disease denotes mortality MESH:D003643
1562 1774-1783 Disease denotes mortality MESH:D003643
1563 1867-1875 Disease denotes COVID-19 MESH:C000657245
1564 1894-1901 Disease denotes obesity MESH:D009765
1565 2105-2114 Disease denotes mortality MESH:D003643

LitCovid-sample-PD-IDO

Id Subject Object Predicate Lexical cue
T207 156-164 http://purl.obolibrary.org/obo/OGMS_0000031 denotes diseases
T208 202-210 http://purl.obolibrary.org/obo/OGMS_0000031 denotes diseases
T209 506-514 http://purl.obolibrary.org/obo/IDO_0000586 denotes infected
T210 655-663 http://purl.obolibrary.org/obo/OGMS_0000031 denotes diseases
T211 726-733 http://purl.obolibrary.org/obo/OGMS_0000031 denotes disease
T212 850-857 http://purl.obolibrary.org/obo/OGMS_0000031 denotes disease
T213 968-975 http://purl.obolibrary.org/obo/OGMS_0000031 denotes Disease
T214 1118-1125 http://purl.obolibrary.org/obo/OGMS_0000031 denotes Disease
T215 1416-1423 http://purl.obolibrary.org/obo/OGMS_0000031 denotes disease
T216 1748-1753 http://purl.obolibrary.org/obo/OBI_0100026 denotes organ

LitCovid-sample-PD-FMA

Id Subject Object Predicate Lexical cue fma_id
T397 1536-1542 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T398 1748-1753 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498

LitCovid-sample-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T296 48-56 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T297 173-210 Disease denotes hypertension, cardiovascular diseases http://purl.obolibrary.org/obo/MONDO_0001302
T298 215-239 Disease denotes type-2 diabetes mellitus http://purl.obolibrary.org/obo/MONDO_0005148
T299 597-609 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T300 619-627 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T301 640-663 Disease denotes cardiovascular diseases http://purl.obolibrary.org/obo/MONDO_0004995
T302 813-825 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T303 835-857 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T304 1025-1033 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T305 1247-1259 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T306 1361-1373 Disease denotes hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T307 1381-1389 Disease denotes diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T308 1401-1423 Disease denotes cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T309 1456-1464 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T310 1512-1516 Disease denotes ARDS http://purl.obolibrary.org/obo/MONDO_0006502
T311 1530-1549 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T312 1804-1811 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T313 1867-1875 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T314 1894-1901 Disease denotes obesity http://purl.obolibrary.org/obo/MONDO_0011122
T315 1962-1972 Disease denotes SARS-CoV-2 http://purl.obolibrary.org/obo/MONDO_0100096
T316 1962-1966 Disease denotes SARS http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-sample-PD-MAT

Id Subject Object Predicate Lexical cue
T128 106-111 http://purl.obolibrary.org/obo/MAT_0000029 denotes males
T129 1536-1542 http://purl.obolibrary.org/obo/MAT_0000119 denotes kidney

LitCovid-sample-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T42 173-185 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T43 187-210 Phenotype denotes cardiovascular diseases http://purl.obolibrary.org/obo/HP_0001626
T44 222-239 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T45 597-609 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T46 640-663 Phenotype denotes cardiovascular diseases http://purl.obolibrary.org/obo/HP_0001626
T47 813-825 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T48 835-857 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T49 1247-1259 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T50 1361-1373 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T51 1401-1423 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T52 1530-1549 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T53 1570-1575 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T54 1804-1811 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T55 1894-1901 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T45 173-185 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T46 187-210 Phenotype denotes cardiovascular diseases http://purl.obolibrary.org/obo/HP_0001626
T47 222-239 Phenotype denotes diabetes mellitus http://purl.obolibrary.org/obo/HP_0000819
T48 597-609 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T49 640-663 Phenotype denotes cardiovascular diseases http://purl.obolibrary.org/obo/HP_0001626
T50 813-825 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T51 835-857 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T52 1247-1259 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T53 1361-1373 Phenotype denotes hypertension http://purl.obolibrary.org/obo/HP_0000822
T54 1401-1423 Phenotype denotes cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T55 1530-1549 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919
T56 1570-1575 Phenotype denotes shock http://purl.obolibrary.org/obo/HP_0031273
T57 1804-1811 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T58 1894-1901 Phenotype denotes obesity http://purl.obolibrary.org/obo/HP_0001513

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
1536 57-65 Species denotes patients Tax:9606
1537 515-523 Species denotes patients Tax:9606
1538 1183-1191 Species denotes patients Tax:9606
1539 1923-1931 Species denotes patients Tax:9606
1540 1962-1972 Species denotes SARS-CoV-2 Tax:2697049
1541 48-56 Disease denotes COVID-19 MESH:C000657245
1542 173-185 Disease denotes hypertension MESH:D006973
1543 187-210 Disease denotes cardiovascular diseases MESH:D002318
1544 215-239 Disease denotes type-2 diabetes mellitus MESH:D003924
1545 506-514 Disease denotes infected MESH:D007239
1546 597-609 Disease denotes hypertension MESH:D006973
1547 619-627 Disease denotes diabetes MESH:D003920
1548 640-663 Disease denotes cardiovascular diseases MESH:D002318
1549 813-825 Disease denotes hypertension MESH:D006973
1550 835-857 Disease denotes cardiovascular disease MESH:D002318
1551 1025-1033 Disease denotes COVID-19 MESH:C000657245
1552 1247-1259 Disease denotes hypertension MESH:D006973
1553 1264-1273 Disease denotes mortality MESH:D003643
1554 1361-1373 Disease denotes hypertension MESH:D006973
1555 1381-1389 Disease denotes diabetes MESH:D003920
1556 1401-1423 Disease denotes cardiovascular disease MESH:D002318
1557 1456-1464 Disease denotes Diabetes MESH:D003920
1558 1512-1516 Disease denotes ARDS MESH:D012128
1559 1530-1549 Disease denotes acute kidney injury MESH:D058186
1560 1563-1575 Disease denotes septic shock MESH:D012772
1561 1603-1612 Disease denotes mortality MESH:D003643
1562 1774-1783 Disease denotes mortality MESH:D003643
1563 1867-1875 Disease denotes COVID-19 MESH:C000657245
1564 1894-1901 Disease denotes obesity MESH:D009765
1565 2105-2114 Disease denotes mortality MESH:D003643

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T336 0-240 Sentence denotes Epidemiological data consistently show that the COVID-19 patients at highest risk of a poor prognosis are males older than 60 years with chronic underlying diseases, mostly hypertension, cardiovascular diseases and type-2 diabetes mellitus.
T337 241-423 Sentence denotes Clinical reports have been rapidly delivered from all over the world, and meta-analyses assessing the prevalence of comorbidities and their impact on prognosis are already available.
T338 424-671 Sentence denotes A meta-analysis pooling data from seven studies following a total number of 1,576 infected patients from hospitals in China found that the most prevalent comorbidities were hypertension (21.1%), diabetes (9.7%), and cardiovascular diseases (8.4%).
T339 672-880 Sentence denotes These increased the risk of developing a more serious disease (i.e., requiring intensive care treatment), with odds ratios ranging from 2.4 (hypertension) to 3.4 (cardiovascular disease) (Yang et al., 2020b).
T340 881-1156 Sentence denotes These findings have been confirmed in the analysis performed by the Chinese Center for Disease Control and Prevention in a huge sample of 72314 COVID-19 cases (Epidemiology Working Group for Ncip Epidemic Response and Chinese Center for Disease Control and Prevention, 2020).
T341 1157-1310 Sentence denotes A study with 1591 Italian patients, similarly, reported a significant association between hypertension and mortality in Intensive Care Unit (63 vs. 40%).
T342 1311-1455 Sentence denotes This series reported an even higher prevalence of hypertension (49%), diabetes (17%), and cardiovascular disease (21%) (Grasselli et al., 2020).
T343 1456-1644 Sentence denotes Diabetes has been reported to predict the occurrence of ARDS (HR = 1.44), acute kidney injury (HR = 3.01), septic shock (HR = 1.95), and all-cause mortality (HR = 1.70) (Zhu et al., 2020).
T344 1645-1803 Sentence denotes Notably, poor glycemic control was significantly associated with worse clinical outcomes, namely multi-organ injuries and higher mortality (Zhu et al., 2020).
T345 1804-1885 Sentence denotes Obesity has also emerged as an important factor in determining COVID-19 severity.
T346 1886-2154 Sentence denotes Indeed, obesity was more frequent in patients admitted to critical care for SARS-CoV-2 as compared to the general population; moreover, the BMI was positively related to the need for invasive mechanical ventilation and mortality (Drucker, 2020; Simonnet et al., 2020).