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PMC:7546130 / 4419-5838 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T32 152-168 Body_part denotes White blood cell http://purl.org/sig/ont/fma/fma62852
T33 164-168 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T34 221-228 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T35 316-331 Body_part denotes (interleukin)-6 http://purl.org/sig/ont/fma/fma264829
T36 317-328 Body_part denotes interleukin http://purl.org/sig/ont/fma/fma86578

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T21 158-163 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T36 158-163 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T37 164-168 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T38 257-260 http://purl.obolibrary.org/obo/CLO_0001053 denotes 121
T39 316-331 http://purl.obolibrary.org/obo/PR_000001393 denotes (interleukin)-6
T40 345-348 http://purl.obolibrary.org/obo/CLO_0054064 denotes 491
T41 491-500 http://purl.obolibrary.org/obo/CLO_0001658 denotes Activated
T42 701-709 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T43 701-709 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T44 743-751 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T45 743-751 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T46 813-821 http://purl.obolibrary.org/obo/UBERON_0001637 denotes Arterial
T47 813-821 http://www.ebi.ac.uk/efo/EFO_0000814 denotes Arterial
T48 867-869 http://purl.obolibrary.org/obo/CLO_0053799 denotes 45

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T10 221-228 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T11 313-315 Chemical denotes IL http://purl.obolibrary.org/obo/CHEBI_63895|http://purl.obolibrary.org/obo/CHEBI_74072
T13 354-356 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T14 357-359 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T15 360-368 Chemical denotes Ferritin http://purl.obolibrary.org/obo/CHEBI_82594
T16 392-394 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T17 395-397 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696
T18 563-573 Chemical denotes Creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T19 606-610 Chemical denotes Urea http://purl.obolibrary.org/obo/CHEBI_16199
T20 611-619 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T21 772-778 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T22 842-856 Chemical denotes carbon dioxide http://purl.obolibrary.org/obo/CHEBI_16526
T23 842-848 Chemical denotes carbon http://purl.obolibrary.org/obo/CHEBI_27594|http://purl.obolibrary.org/obo/CHEBI_33415
T25 1106-1112 Chemical denotes oxygen http://purl.obolibrary.org/obo/CHEBI_25805
T26 1261-1265 Chemical denotes urea http://purl.obolibrary.org/obo/CHEBI_16199
T27 1266-1274 Chemical denotes nitrogen http://purl.obolibrary.org/obo/CHEBI_25555
T28 1341-1351 Chemical denotes creatinine http://purl.obolibrary.org/obo/CHEBI_16737
T29 1395-1397 Chemical denotes NA http://purl.obolibrary.org/obo/CHEBI_33696

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T34 0-74 Sentence denotes Table 1 Laboratory data, respiratory function, and mechanical ventilation†
T35 75-151 Sentence denotes Variable Reference range, adults On admission ICU day 3 ICU day 7 ICU day 14
T36 152-209 Sentence denotes White blood cell (109/L) 4.50–9.80 9.58 13.99 24.14 23.58
T37 210-260 Sentence denotes C-reactive protein (mg/L) 0.0–5.0 137 77.7 138 121
T38 261-312 Sentence denotes Procalcitonin (mcg/L) 0.00–0.25 1.37 2.09 1.67 2.07
T39 313-359 Sentence denotes IL (interleukin)-6 (ng/L) < 3.4 491 32.7 NA NA
T40 360-397 Sentence denotes Ferritin (mcg/L) 30–400 605 378 NA NA
T41 398-443 Sentence denotes D-Dimer (mcg/L) 0.00–500.0 1605 810 3497 6941
T42 444-490 Sentence denotes Fibrinogen (g/L) 2.00–4.00 6.10 3.84 6.06 8.47
T43 491-562 Sentence denotes Activated partial-thromboplastin time (sec) 28.0–40.0 39 27.3 33.6 32.2
T44 563-605 Sentence denotes Creatinine (mg/dL) 0.51–0.95 2.4 5 2.9 2.6
T45 606-648 Sentence denotes Urea nitrogen (mg/dL) 21–54 90 172 135 167
T46 649-700 Sentence denotes Lactate dehydrogenase (U/L) 135–214 425 282 357 265
T47 701-742 Sentence denotes Arterial pH 7.35–7.45 7.36 7.35 7.23 7.34
T48 743-812 Sentence denotes Arterial partial pressure of oxygen (mmHg) 83–108 71.8 73.3 80.8 56.1
T49 813-889 Sentence denotes Arterial partial pressure of carbon dioxide (mmHg) 32–45 42.4 48.1 54.1 55.4
T50 890-930 Sentence denotes Lactate (mmol/L) 0.5–1.6 1.1 1.1 1.6 0.8
T51 931-1025 Sentence denotes Nasopharyngeal swab Positive-quite positive-negative Positive Positive Positive Quite positive
T52 1026-1084 Sentence denotes Ventilation mode Controlled Controlled Controlled Assisted
T53 1085-1128 Sentence denotes Fraction of inspired oxygen 0.8 0.6 0.6 0.6
T54 1129-1181 Sentence denotes Positive end-expiratory pressure (cmH2O) 15 15 13 12
T55 1182-1233 Sentence denotes Continuous renal replacement therapy NO YES YES YES
T56 1234-1318 Sentence denotes †To convert the values for urea nitrogen to millimoles per liter, multiply by 0.357.
T57 1319-1394 Sentence denotes To convert values for creatinine to micromoles per liter, multiply by 88.4.
T58 1395-1419 Sentence denotes NA denotes not available

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
42 210-228 Gene denotes C-reactive protein Gene:1401
43 317-331 Gene denotes interleukin)-6 Gene:3569
44 444-454 Gene denotes Fibrinogen Gene:2244
45 563-573 Chemical denotes Creatinine MESH:D003404
46 606-610 Chemical denotes Urea MESH:D014508
47 611-619 Chemical denotes nitrogen MESH:D009584
51 1261-1265 Chemical denotes urea MESH:D014508
52 1266-1274 Chemical denotes nitrogen MESH:D009584
53 1341-1351 Chemical denotes creatinine MESH:D003404