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PMC:7545501 / 25054-30247 JSONTXT

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LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T4 4682-4687 Body_part denotes scale http://purl.obolibrary.org/obo/UBERON_0002542

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T24 134-142 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T25 2568-2576 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T26 3203-3211 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T27 4740-4748 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T84 211-213 http://purl.obolibrary.org/obo/CLO_0001313 denotes 36
T85 795-802 http://purl.obolibrary.org/obo/CLO_0009609 denotes wishing
T86 1213-1214 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T87 1416-1417 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T88 1471-1472 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T89 1531-1532 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T90 1846-1847 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T91 2914-2915 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T92 4026-4031 http://purl.obolibrary.org/obo/CLO_0009985 denotes focus
T93 4143-4144 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T94 4181-4182 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T95 4329-4330 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T96 4585-4589 http://purl.obolibrary.org/obo/CLO_0001185 denotes 2018
T97 4691-4698 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testing
T98 4903-4904 http://purl.obolibrary.org/obo/CLO_0001020 denotes a

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T20 659-668 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867
T21 683-692 Chemical denotes indicator http://purl.obolibrary.org/obo/CHEBI_47867

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T109 0-34 Sentence denotes Considerations for GHS Index users
T110 35-496 Sentence denotes Some researchers have turned to the GHS Index to elucidate observed between-country disparities in COVID-19-associated morbidity, mortality and case fatality estimates.4 30 33 36 However, drawing simple correlations with countries’ overall scores does not account for the fact that these scores are meant to capture capacities spanning the breadth of the health security life cycle, from outbreak prevention at the source, to early detection, to rapid response.
T111 497-579 Sentence denotes In other words, overall scores summarise country capacities across all categories.
T112 580-764 Sentence denotes However, countries with high overall scores may still have low category-level, indicator-level and sub-indicator-level scores that more strongly influence outbreak-associated outcomes.
T113 765-1068 Sentence denotes Therefore, we encourage users wishing to analyse correlations between country scores and health outcomes to examine scores at more granular levels, adjust model weights to reflect country contexts and priorities and consider more nuanced outcomes when analysing countries’ performances during outbreaks.
T114 1069-1324 Sentence denotes For example, users might examine relationships between category 2 (detection) scores and the number of misidentified or under-reported cases in a given country, rather than examining correlations between countries’ overall scores and absolute case counts.
T115 1325-1433 Sentence denotes Furthermore, we stress that implementation of health security capacities is rarely—if ever—a linear process.
T116 1434-1566 Sentence denotes In other words, the mere presence of a given capacity does not always translate predictably into a desired health outcome or impact.
T117 1567-1721 Sentence denotes Conceptualising health systems as complex adaptive systems may offer more insight into the varied pathways by which countries achieve public health goals.
T118 1722-1884 Sentence denotes Rickles et al37 note, for example, that single events can have long-lasting effects on complex systems (‘history matters’), a phenomenon known as path dependence.
T119 1885-2423 Sentence denotes Paina and Peters further explicate this point, describing how path dependence can complicate health system evolution, particularly in the context of rapidly changing technology and when diverse stakeholders are involved—as is the case in the global health security space.38 They also highlight the futility of transposing health system innovations from countries where they have succeeded into countries with different political processes, or that have not established the institutions or systems required for said innovations to succeed.
T120 2424-2586 Sentence denotes This might further explain why countries with similar levels of capacity (as indicated by GHS Index scores) might nevertheless report divergent COVID-19 outcomes.
T121 2587-2783 Sentence denotes Composite scores and quantitative correlations are thus useful, but alone are insufficient tools for determining causal relationships between health system capacities and observed health outcomes.
T122 2784-3126 Sentence denotes The GHS Index’s transparent accounting of country capacities across various domains of health security is intended to function as a gateway to more nuanced case study analyses, in-country evaluations or after-action assessments that could help elucidate the causal mechanisms underpinning observed health outcomes during or after an outbreak.
T123 3127-3451 Sentence denotes These latter approaches are better-suited to answering why, with respect to COVID-19, high-scoring countries like the USA, the UK, Sweden and Brazil have fared significantly worse than similarly high-ranked states like Thailand, and even compared with lower-ranked states like New Zealand, Vietnam and the Republic of Korea.
T124 3452-3670 Sentence denotes Such analyses of health system dynamics across specific country contexts are beyond the scope of the GHS Index itself, which solely monitors and documents the presence or absence of critical health security capacities.
T125 3671-3914 Sentence denotes Therefore, to maximise the utility of the GHS Index, users should couple reviews of country scores with additional modes of data collection and analysis to answer questions regarding relationships between health capacities and health outcomes.
T126 3915-4080 Sentence denotes Such approaches might include key informant interviews, surveys, in-country observations, case study analyses, focus groups or participatory action research methods.
T127 4081-4162 Sentence denotes Importantly, users should also note that the GHS Index is not a forecasting tool.
T128 4163-4282 Sentence denotes Rather, it offers a cross-sectional snapshot of countries’ health security capacities as measured at one point in time.
T129 4283-4509 Sentence denotes It cannot and does not predict whether or how a country will leverage available capacities to mitigate an unfolding crisis, nor does it make assumptions about the political decision-making processes underpinning these efforts.
T130 4510-4826 Sentence denotes Furthermore, the inaugural GHS Index—which features data collected between 2018 and 2019 and was released in September 2019—does not account for many countries’ efforts to scale up testing and healthcare capacities in response to COVID-19, nor whether these efforts could be readily leveraged for future emergencies.
T131 4827-5000 Sentence denotes Finally, we reiterate that scores in all categories are intended to provide a comprehensive snapshot, based on publicly available data, of country capacities in these areas.
T132 5001-5193 Sentence denotes Scores and their accompanying justifications are meant to inform—not supplant—country efforts to undertake JEEs and prioritise health security-strengthening measures in their respective NAPHS.

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
86 134-142 Disease denotes COVID-19 MESH:C000657245
87 165-174 Disease denotes mortality MESH:D003643
89 2568-2576 Disease denotes COVID-19 MESH:C000657245
91 3203-3211 Disease denotes COVID-19 MESH:C000657245
93 4740-4748 Disease denotes COVID-19 MESH:C000657245

2_test

Id Subject Object Predicate Lexical cue
33033053-17933949-15160603 1735-1737 17933949 denotes 37
33033053-21821667-15160604 2156-2158 21821667 denotes 38