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PMC:7544943 / 1875-3470 JSONTXT

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LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 1158-1162 Body_part denotes hand http://purl.obolibrary.org/obo/UBERON_0002398

LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T3 246-250 Body_part denotes cell http://purl.org/sig/ont/fma/fma68646
T4 295-308 Body_part denotes glycoproteins http://purl.org/sig/ont/fma/fma62925
T5 336-348 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T6 650-657 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T7 841-853 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T8 969-981 Body_part denotes glycoprotein http://purl.org/sig/ont/fma/fma62925
T9 1129-1136 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T10 1158-1162 Body_part denotes hand http://purl.org/sig/ont/fma/fma9712
T11 1357-1360 Body_part denotes RNA http://purl.org/sig/ont/fma/fma67095

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T14 10-34 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T15 36-44 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T16 142-189 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T17 142-175 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T18 191-199 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T19 484-517 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T20 531-539 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T21 590-598 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T22 1168-1176 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T23 1584-1592 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T9 46-49 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T10 57-58 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T11 246-250 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T12 398-399 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T13 424-429 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T14 604-610 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes humans
T15 680-685 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes human
T16 735-744 http://purl.obolibrary.org/obo/CLO_0001658 denotes activated
T17 761-769 http://purl.obolibrary.org/obo/NCBITaxon_9606 denotes by human
T18 1280-1281 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T19 1396-1397 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T20 1409-1411 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T21 1539-1547 http://purl.obolibrary.org/obo/CLO_0001658 denotes actively

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
79 430-461 Gene denotes angiotensin-converting enzyme 2 Gene:59272
80 463-467 Gene denotes ACE2 Gene:59272
81 686-690 Gene denotes ACE2 Gene:59272
82 835-840 Gene denotes spike Gene:43740568
83 857-861 Gene denotes ACE2 Gene:59272
84 1033-1037 Gene denotes ACE2 Gene:59272
85 1194-1198 Gene denotes Mpro Gene:8673700
86 142-189 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
87 191-201 Species denotes SARS-CoV-2 Tax:2697049
88 222-233 Species denotes coronavirus Tax:11118
89 424-429 Species denotes human Tax:9606
90 484-529 Species denotes severe acute respiratory syndrome coronavirus Tax:694009
91 531-539 Species denotes SARS-CoV Tax:694009
92 590-600 Species denotes SARS-CoV-2 Tax:2697049
93 604-610 Species denotes humans Tax:9606
94 680-685 Species denotes human Tax:9606
95 764-769 Species denotes human Tax:9606
96 1168-1178 Species denotes SARS-CoV-2 Tax:2697049
97 1584-1594 Species denotes SARS-CoV-2 Tax:2697049
98 1123-1128 Gene denotes spike Gene:43740568
99 637-642 Gene denotes spike Gene:43740568
100 289-294 Gene denotes spike Gene:43740568
101 643-649 Chemical denotes glycol MESH:D006018
102 880-886 Chemical denotes ARG403
103 888-894 Chemical denotes TYR453
104 896-902 Chemical denotes SER494
105 904-910 Chemical denotes TYR495
106 912-918 Chemical denotes PHE497
107 920-926 Chemical denotes GLN498
108 928-934 Chemical denotes THR500
109 936-942 Chemical denotes ASN501
110 944-950 Chemical denotes TYR505
111 4-29 Disease denotes novel coronavirus disease MESH:C000657245
112 36-44 Disease denotes COVID-19 MESH:C000657245
113 1462-1470 Disease denotes toxicity MESH:D064420

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T7 1336-1347 http://purl.obolibrary.org/obo/GO_0006412 denotes translation
T8 1440-1457 http://purl.obolibrary.org/obo/GO_0019079 denotes viral replication
T9 1440-1457 http://purl.obolibrary.org/obo/GO_0019058 denotes viral replication

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T24 0-115 Sentence denotes The novel coronavirus disease 2019 (COVID-19) has become a major threat worldwide due to its fast-spreading nature.
T25 116-203 Sentence denotes This disease is caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2).
T26 204-330 Sentence denotes The entry of this coronavirus to the host cell is mediated through the transmembrane spike glycoproteins (Hasan et al., 2020).
T27 331-632 Sentence denotes This glycoprotein consists of two subunits and is reported to have a similar affinity to the human angiotensin-converting enzyme 2 (ACE2) as that of the severe acute respiratory syndrome coronavirus (SARS-CoV), which in turn results in efficient spreading of SARS-CoV-2 in humans (Walls et al., 2020).
T28 633-800 Sentence denotes The spike glycol protein binds to its receptor human ACE2 by its receptor-binding domain (RBD) and is activated proteolytically by human protease (Shang et al., 2020).
T29 801-1001 Sentence denotes The interaction of the RBD of the spike glycoprotein to ACE2 is carried out by ARG403, TYR453, SER494, TYR495, PHE497, GLN498, THR500, ASN501, TYR505 residues of spike glycoprotein (Lan et al., 2020).
T30 1002-1144 Sentence denotes The interaction of RBD Spro to ACE2 can be inhibited by the small molecules that interact with the above residues of RBD spike protein (Spro).
T31 1145-1361 Sentence denotes On the other hand, the SARS-CoV-2 main protease (Mpro), also known as chymotrypsin-like protease, or 3-C-like protease (3CLpro), plays a vital role in processing the polyproteins through the translation of viral RNA.
T32 1362-1492 Sentence denotes This protease is reported to have a minimum of 11 cleavage sites resulting in viral replication and toxicity (Zhang et al., 2020).
T33 1493-1595 Sentence denotes The inhibition of these two viral targets can actively block the fusion and replication of SARS-CoV-2.

2_test

Id Subject Object Predicate Lexical cue
32938313-32155444-56197365 626-630 32155444 denotes 2020
32938313-32376634-56197366 794-798 32376634 denotes 2020
32938313-32198291-56197367 1486-1490 32198291 denotes 2020