PMC:7543426 / 9938-11078
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T52 | 22-27 | Body_part | denotes | Lungs | http://purl.org/sig/ont/fma/fma68877 |
| T53 | 389-393 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T54 | 395-397 | Body_part | denotes | A1 | http://purl.org/sig/ont/fma/fma66592 |
| T55 | 399-404 | Body_part | denotes | Lungs | http://purl.org/sig/ont/fma/fma68877 |
| T56 | 475-477 | Body_part | denotes | A2 | http://purl.org/sig/ont/fma/fma66595 |
| T57 | 482-484 | Body_part | denotes | A3 | http://purl.org/sig/ont/fma/fma66599 |
| T58 | 651-659 | Body_part | denotes | alveolar | http://purl.org/sig/ont/fma/fma264783 |
| T59 | 754-756 | Body_part | denotes | A3 | http://purl.org/sig/ont/fma/fma66599 |
| T60 | 788-798 | Body_part | denotes | pneumocyte | http://purl.org/sig/ont/fma/fma62499 |
| T61 | 829-838 | Body_part | denotes | cytoplasm | http://purl.org/sig/ont/fma/fma66835 |
| T62 | 902-915 | Body_part | denotes | Alveolar duct | http://purl.org/sig/ont/fma/fma7341 |
| T63 | 948-959 | Body_part | denotes | capillaries | http://purl.org/sig/ont/fma/fma63194 |
| T64 | 1106-1108 | Body_part | denotes | A2 | http://purl.org/sig/ont/fma/fma66595 |
| T65 | 1117-1119 | Body_part | denotes | A3 | http://purl.org/sig/ont/fma/fma66599 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T44 | 139-155 | Body_part | denotes | pleural effusion | http://purl.obolibrary.org/obo/UBERON_0000175 |
| T45 | 389-393 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T46 | 911-915 | Body_part | denotes | duct | http://purl.obolibrary.org/obo/UBERON_0000058 |
| T47 | 991-997 | Body_part | denotes | vessel | http://purl.obolibrary.org/obo/UBERON_0000055 |
| T48 | 1094-1099 | Body_part | denotes | Scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T110 | 270-285 | Disease | denotes | pulmonary edema | http://purl.obolibrary.org/obo/MONDO_0006932 |
| T111 | 313-331 | Disease | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/MONDO_0005279 |
| T112 | 568-580 | Disease | denotes | inflammation | http://purl.obolibrary.org/obo/MONDO_0021166 |
| T113 | 765-776 | Disease | denotes | Hyperplasia | http://purl.obolibrary.org/obo/MONDO_0005043 |
| T114 | 974-980 | Disease | denotes | injury | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T115 | 998-1008 | Disease | denotes | vasculitis | http://purl.obolibrary.org/obo/MONDO_0018882 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T131 | 399-404 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lungs |
| T127 | 22-27 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | Lungs |
| T128 | 139-155 | http://purl.obolibrary.org/obo/UBERON_0000175 | denotes | pleural effusion |
| T129 | 389-393 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T130 | 389-393 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T132 | 475-477 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | A2 |
| T133 | 482-484 | http://purl.obolibrary.org/obo/CLO_0001577 | denotes | A3 |
| T134 | 602-611 | http://purl.obolibrary.org/obo/UBERON_0000158 | denotes | membranes |
| T135 | 628-629 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T136 | 754-756 | http://purl.obolibrary.org/obo/CLO_0001577 | denotes | A3 |
| T137 | 911-915 | http://purl.obolibrary.org/obo/UBERON_0000025 | denotes | duct |
| T138 | 911-915 | http://purl.obolibrary.org/obo/UBERON_0000058 | denotes | duct |
| T139 | 961-963 | http://purl.obolibrary.org/obo/CLO_0001812 | denotes | B3 |
| T140 | 991-997 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessel |
| T141 | 1106-1108 | http://purl.obolibrary.org/obo/CLO_0001562 | denotes | A2 |
| T142 | 1117-1119 | http://purl.obolibrary.org/obo/CLO_0001577 | denotes | A3 |
| T143 | 1120-1122 | http://purl.obolibrary.org/obo/CLO_0001812 | denotes | B3 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 285 | 37-45 | Species | denotes | patients | Tax:9606 |
| 286 | 78-87 | Disease | denotes | edematous | MESH:D004487 |
| 287 | 139-155 | Disease | denotes | pleural effusion | MESH:D010996 |
| 288 | 270-285 | Disease | denotes | pulmonary edema | MESH:D011654 |
| 289 | 300-331 | Disease | denotes | Subsegmental pulmonary embolism | MESH:D011655 |
| 303 | 1065-1068 | Chemical | denotes | H&E | |
| 304 | 1070-1082 | Chemical | denotes | haematoxylin | MESH:D006416 |
| 305 | 1087-1092 | Chemical | denotes | eosin | MESH:D004801 |
| 306 | 519-548 | Disease | denotes | parenchymal multifocal damage | MESH:D002543 |
| 307 | 568-580 | Disease | denotes | inflammation | MESH:D007249 |
| 308 | 651-666 | Disease | denotes | alveolar damage | MESH:D055370 |
| 309 | 765-798 | Disease | denotes | Hyperplasia of type II pneumocyte | MESH:D006965 |
| 310 | 916-924 | Disease | denotes | fibrosis | MESH:D005355 |
| 311 | 937-944 | Disease | denotes | thrombi | MESH:D013927 |
| 312 | 965-980 | Disease | denotes | Vascular injury | MESH:D057772 |
| 313 | 991-1008 | Disease | denotes | vessel vasculitis | MESH:D014657 |
| 314 | 1013-1027 | Disease | denotes | vascular edema | MESH:D004487 |
| 315 | 1033-1049 | Disease | denotes | Pleural fibrosis | MESH:D005355 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T39 | 116-134 | Phenotype | denotes | pleural thickening | http://purl.obolibrary.org/obo/HP_0031944 |
| T40 | 139-155 | Phenotype | denotes | pleural effusion | http://purl.obolibrary.org/obo/HP_0002202 |
| T41 | 270-285 | Phenotype | denotes | pulmonary edema | http://purl.obolibrary.org/obo/HP_0100598 |
| T42 | 313-331 | Phenotype | denotes | pulmonary embolism | http://purl.obolibrary.org/obo/HP_0002204 |
| T43 | 643-666 | Phenotype | denotes | diffuse alveolar damage | http://purl.obolibrary.org/obo/HP_0033006 |
| T44 | 998-1008 | Phenotype | denotes | vasculitis | http://purl.obolibrary.org/obo/HP_0002633 |
| T45 | 1022-1027 | Phenotype | denotes | edema | http://purl.obolibrary.org/obo/HP_0000969 |
LitCovid-PD-GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T4 | 568-580 | http://purl.obolibrary.org/obo/GO_0006954 | denotes | inflammation |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T110 | 0-21 | Sentence | denotes | Macroscopic Findings. |
| T111 | 22-156 | Sentence | denotes | Lungs from all patients were increased in volume, firm, edematous, and congested with diffuse pleural thickening and pleural effusion. |
| T112 | 157-299 | Sentence | denotes | Cut surface showed consolidation of lobes and red congested areas, with thickening of the interstitial septa and pulmonary edema (Figure 1A1). |
| T113 | 300-352 | Sentence | denotes | Subsegmental pulmonary embolism was seen in 5 cases. |
| T114 | 353-362 | Sentence | denotes | Figure 1. |
| T115 | 364-394 | Sentence | denotes | Pathological findings in lung. |
| T116 | 395-474 | Sentence | denotes | A1, Lungs showed an increase in volume and were firmer and heavier than normal. |
| T117 | 475-667 | Sentence | denotes | A2 and A3, Light microscopic analysis shows parenchymal multifocal damage with intraalveolar inflammation, fibrin, and hyaline membranes consistent with a diagnosis of diffuse alveolar damage. |
| T118 | 668-753 | Sentence | denotes | Both acute exudative inflammatory process and fibrous proliferative phase were found. |
| T119 | 754-897 | Sentence | denotes | A3 and A4, Hyperplasia of type II pneumocyte, characterized by amphophilic cytoplasm, large nuclei, and prominent nucleoli, are shown (arrows). |
| T120 | 898-925 | Sentence | denotes | B1, Alveolar duct fibrosis. |
| T121 | 926-960 | Sentence | denotes | B2, Fibrin thrombi in capillaries. |
| T122 | 961-1028 | Sentence | denotes | B3, Vascular injury including vessel vasculitis and vascular edema. |
| T123 | 1029-1050 | Sentence | denotes | B4, Pleural fibrosis. |
| T124 | 1051-1093 | Sentence | denotes | Abbreviation: H&E, haematoxylin and eosin. |
| T125 | 1094-1140 | Sentence | denotes | Scale bars: A2, 14 µm; A3–B3, 7 µm; B4, 21 µm. |