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PMC:7543426 / 6780-9884 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T42 893-899 Body_part denotes Kidney http://purl.org/sig/ont/fma/fma7203
T43 1254-1259 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T44 1361-1383 Body_part denotes Atrioventricular valve http://purl.org/sig/ont/fma/fma7233
T45 1434-1440 Body_part denotes Kidney http://purl.org/sig/ont/fma/fma7203
T46 1840-1856 Body_part denotes Pulmonary artery http://purl.org/sig/ont/fma/fma66326
T47 2135-2141 Body_part denotes Kidney http://purl.org/sig/ont/fma/fma7203
T48 2444-2447 Body_part denotes HIV http://purl.org/sig/ont/fma/fma278683
T49 2570-2578 Body_part denotes Prostate http://purl.org/sig/ont/fma/fma9600
T50 2750-2758 Body_part denotes Prostate http://purl.org/sig/ont/fma/fma9600

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T35 893-899 Body_part denotes Kidney http://purl.obolibrary.org/obo/UBERON_0002113
T36 1254-1259 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T37 1361-1383 Body_part denotes Atrioventricular valve http://purl.obolibrary.org/obo/UBERON_0002133
T38 1378-1383 Body_part denotes valve http://purl.obolibrary.org/obo/UBERON_0003978
T39 1434-1440 Body_part denotes Kidney http://purl.obolibrary.org/obo/UBERON_0002113
T40 1840-1856 Body_part denotes Pulmonary artery http://purl.obolibrary.org/obo/UBERON_0002012
T41 1850-1856 Body_part denotes artery http://purl.obolibrary.org/obo/UBERON_0001637
T42 2135-2141 Body_part denotes Kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T54 128-136 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T55 709-746 Disease denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T56 729-746 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275
T57 761-776 Disease denotes Cardiac disease http://purl.obolibrary.org/obo/MONDO_0005267
T58 816-828 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T59 843-851 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T60 866-882 Disease denotes Schizophrenia 1 http://purl.obolibrary.org/obo/MONDO_0008414
T61 866-879 Disease denotes Schizophrenia http://purl.obolibrary.org/obo/MONDO_0005090
T62 893-907 Disease denotes Kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T64 1204-1216 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T65 1245-1267 Disease denotes Ischemic heart disease http://purl.obolibrary.org/obo/MONDO_0024644
T66 1254-1267 Disease denotes heart disease http://purl.obolibrary.org/obo/MONDO_0005267
T67 1268-1282 Disease denotes Cardiomyopathy http://purl.obolibrary.org/obo/MONDO_0004994
T68 1284-1299 Disease denotes Aortic aneurysm http://purl.obolibrary.org/obo/MONDO_0005160
T69 1351-1359 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T70 1395-1414 Disease denotes Atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T71 1416-1420 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T72 1434-1448 Disease denotes Kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T74 1492-1496 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T75 1548-1561 Disease denotes Schizophrenia http://purl.obolibrary.org/obo/MONDO_0005090
T76 1614-1636 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T77 1645-1653 Disease denotes dementia http://purl.obolibrary.org/obo/MONDO_0001627
T78 1706-1728 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T79 1730-1734 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T80 1858-1868 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T81 1920-1934 Disease denotes Myelodysplasia http://purl.obolibrary.org/obo/MONDO_0018881
T82 1979-1994 Disease denotes Aortic aneurysm http://purl.obolibrary.org/obo/MONDO_0005160
T83 1996-2000 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T84 2121-2133 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T85 2135-2149 Disease denotes Kidney disease http://purl.obolibrary.org/obo/MONDO_0001343|http://purl.obolibrary.org/obo/MONDO_0005240
T87 2151-2159 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T88 2161-2165 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T89 2167-2174 Disease denotes Obesity http://purl.obolibrary.org/obo/MONDO_0011122
T90 2228-2250 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T91 2252-2260 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T92 2262-2282 Disease denotes Psychiatric disorder http://purl.obolibrary.org/obo/MONDO_0002025
T93 2348-2352 Disease denotes COPD http://purl.obolibrary.org/obo/MONDO_0005002
T94 2354-2390 Disease denotes Hypertension Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0001302
T95 2354-2366 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T96 2368-2390 Disease denotes Cardiovascular disease http://purl.obolibrary.org/obo/MONDO_0004995
T97 2444-2457 Disease denotes HIV infection http://purl.obolibrary.org/obo/MONDO_0005109
T98 2448-2457 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T99 2510-2527 Disease denotes Parkinson disease http://purl.obolibrary.org/obo/MONDO_0005180
T100 2529-2541 Disease denotes Hypertension http://purl.obolibrary.org/obo/MONDO_0005044
T101 2543-2568 Disease denotes Transient ischemic attack http://purl.obolibrary.org/obo/MONDO_0005264
T102 2570-2590 Disease denotes Prostate hypertrophy http://purl.obolibrary.org/obo/MONDO_0010811
T103 2644-2652 Disease denotes Diabetes http://purl.obolibrary.org/obo/MONDO_0005015
T104 2705-2717 Disease denotes Endocarditis http://purl.obolibrary.org/obo/MONDO_0005025
T105 2750-2770 Disease denotes Prostate hypertrophy http://purl.obolibrary.org/obo/MONDO_0010811
T106 2772-2787 Disease denotes Aortic aneurysm http://purl.obolibrary.org/obo/MONDO_0005160
T107 2789-2808 Disease denotes Atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T108 3060-3103 Disease denotes COPD, chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005002
T109 3086-3103 Disease denotes pulmonary disease http://purl.obolibrary.org/obo/MONDO_0005275

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T95 125-127 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T96 204-206 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T97 559-561 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T98 618-620 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T99 640-642 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T100 893-899 http://purl.obolibrary.org/obo/UBERON_0002113 denotes Kidney
T101 893-899 http://www.ebi.ac.uk/efo/EFO_0000927 denotes Kidney
T102 893-899 http://www.ebi.ac.uk/efo/EFO_0000929 denotes Kidney
T103 1254-1259 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T104 1254-1259 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T105 1254-1259 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T106 1254-1259 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T107 1284-1290 http://www.ebi.ac.uk/efo/EFO_0000265 denotes Aortic
T108 1378-1383 http://www.ebi.ac.uk/efo/EFO_0000825 denotes valve
T109 1434-1440 http://purl.obolibrary.org/obo/UBERON_0002113 denotes Kidney
T110 1434-1440 http://www.ebi.ac.uk/efo/EFO_0000927 denotes Kidney
T111 1434-1440 http://www.ebi.ac.uk/efo/EFO_0000929 denotes Kidney
T112 1840-1856 http://purl.obolibrary.org/obo/UBERON_0002012 denotes Pulmonary artery
T113 1840-1856 http://www.ebi.ac.uk/efo/EFO_0001399 denotes Pulmonary artery
T114 1979-1985 http://www.ebi.ac.uk/efo/EFO_0000265 denotes Aortic
T115 2031-2033 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T116 2135-2141 http://purl.obolibrary.org/obo/UBERON_0002113 denotes Kidney
T117 2135-2141 http://www.ebi.ac.uk/efo/EFO_0000927 denotes Kidney
T118 2135-2141 http://www.ebi.ac.uk/efo/EFO_0000929 denotes Kidney
T119 2429-2431 http://purl.obolibrary.org/obo/CLO_0050509 denotes 27
T120 2683-2685 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T121 2687-2692 http://purl.obolibrary.org/obo/CLO_0007489 denotes M 86
T122 2772-2778 http://www.ebi.ac.uk/efo/EFO_0000265 denotes Aortic
T123 2896-2898 http://purl.obolibrary.org/obo/CLO_0001000 denotes 35
T124 2988-2990 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
185 0-7 Species denotes Patient Tax:9606
189 137-145 Species denotes patients Tax:9606
190 266-274 Species denotes patients Tax:9606
191 128-136 Disease denotes COVID-19 MESH:C000657245
201 549-557 Species denotes patients Tax:9606
202 648-651 Species denotes Men Tax:9606
203 672-677 Species denotes Women Tax:9606
204 709-746 Disease denotes Chronic obstructive pulmonary disease MESH:D029424
205 761-776 Disease denotes Cardiac disease MESH:D006331
206 816-828 Disease denotes Hypertension MESH:D006973
207 843-851 Disease denotes Diabetes MESH:D003920
208 866-879 Disease denotes Schizophrenia MESH:D012559
209 893-907 Disease denotes Kidney disease MESH:D007674
211 432-439 Species denotes Patient Tax:9606
243 1055-1062 Species denotes Patient Tax:9606
244 1150-1155 Disease denotes Death MESH:D003643
245 1177-1182 Disease denotes Death MESH:D003643
246 1351-1383 Disease denotes Diabetes Atrioventricular valve MESH:D003920
247 1395-1448 Disease denotes Atrial fibrillation COPD Malignancy Kidney disease MESH:D001281
248 1453-1478 Disease denotes Cardiorespiratory failure MESH:D006333
249 1492-1526 Disease denotes COPD 1 Cardiorespiratory failure MESH:D029424
250 1548-1592 Disease denotes Schizophrenia 28 Cardiorespiratory failure MESH:C563812
251 1614-1653 Disease denotes Cardiovascular disease Senile dementia MESH:D002318
252 1659-1684 Disease denotes Cardiorespiratory failure MESH:D006333
253 1706-1764 Disease denotes Cardiovascular disease COPD 3 Cardiorespiratory failure MESH:D002318
254 1778-1818 Disease denotes Malignancy 2 Cardiorespiratory failure MESH:D006333
255 1840-1898 Disease denotes Pulmonary artery thrombosis 4 Cardiorespiratory failure MESH:D012131
256 1920-1964 Disease denotes Myelodysplasia 4 Cardiorespiratory failure MESH:C564499
257 1979-2000 Disease denotes Aortic aneurysm COPD MESH:D001014
258 2005-2030 Disease denotes Cardiorespiratory failure MESH:D006333
259 2069-2094 Disease denotes Cardiorespiratory failure MESH:D006333
260 2109-2149 Disease denotes Malignancy Hypertension Kidney disease MESH:D006974
261 2151-2205 Disease denotes Diabetes COPD Obesity 29 Cardiorespiratory failure MESH:D003920
262 2228-2282 Disease denotes Cardiovascular disease Diabetes Psychiatric disorder MESH:D002318
263 2288-2313 Disease denotes Cardiorespiratory failure MESH:D006333
264 2336-2390 Disease denotes Malignancy COPD Hypertension Cardiovascular disease MESH:D002318
265 2396-2421 Disease denotes Cardiorespiratory failure MESH:D006333
266 2444-2487 Disease denotes HIV infection 6 Cardiorespiratory failure MESH:D015658
267 2644-2682 Disease denotes Diabetes 1 Cardiorespiratory failure MESH:D003922
268 2705-2717 Disease denotes Endocarditis MESH:D004696
269 2743-2841 Disease denotes aureus Prostate hypertrophy Aortic aneurysm Atrial fibrillation 1 Cardiorespiratory failure 19 MESH:C000657245
270 2863-2888 Disease denotes Cardiorespiratory failure MESH:D006333
271 2912-2937 Disease denotes Cardiorespiratory failure MESH:D006333
272 2962-2987 Disease denotes Cardiorespiratory failure MESH:D006333
273 3020-3045 Disease denotes Cardiorespiratory failure MESH:D006333
275 1049-1054 Disease denotes Death MESH:D003643
278 3060-3064 Disease denotes COPD MESH:D029424
279 3066-3103 Disease denotes chronic obstructive pulmonary disease MESH:D029424

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T2 709-746 Phenotype denotes Chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510
T3 816-828 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T4 866-879 Phenotype denotes Schizophrenia http://purl.obolibrary.org/obo/HP_0100753
T5 893-907 Phenotype denotes Kidney disease http://purl.obolibrary.org/obo/HP_0000112
T6 1204-1216 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T7 1268-1282 Phenotype denotes Cardiomyopathy http://purl.obolibrary.org/obo/HP_0001638
T8 1284-1299 Phenotype denotes Aortic aneurysm http://purl.obolibrary.org/obo/HP_0004942
T9 1395-1414 Phenotype denotes Atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T10 1416-1420 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T11 1434-1448 Phenotype denotes Kidney disease http://purl.obolibrary.org/obo/HP_0000112
T12 1492-1496 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T13 1548-1561 Phenotype denotes Schizophrenia http://purl.obolibrary.org/obo/HP_0100753
T14 1614-1636 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T15 1645-1653 Phenotype denotes dementia http://purl.obolibrary.org/obo/HP_0000726
T16 1706-1728 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T17 1730-1734 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T18 1850-1868 Phenotype denotes artery thrombosis http://purl.obolibrary.org/obo/HP_0004420
T19 1920-1934 Phenotype denotes Myelodysplasia http://purl.obolibrary.org/obo/HP_0002863
T20 1979-1994 Phenotype denotes Aortic aneurysm http://purl.obolibrary.org/obo/HP_0004942
T21 1996-2000 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T22 2121-2133 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T23 2135-2149 Phenotype denotes Kidney disease http://purl.obolibrary.org/obo/HP_0000112
T24 2161-2165 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T25 2167-2174 Phenotype denotes Obesity http://purl.obolibrary.org/obo/HP_0001513
T26 2228-2250 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T27 2262-2282 Phenotype denotes Psychiatric disorder http://purl.obolibrary.org/obo/HP_0000708
T28 2348-2352 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T29 2354-2366 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T30 2368-2390 Phenotype denotes Cardiovascular disease http://purl.obolibrary.org/obo/HP_0001626
T31 2510-2519 Phenotype denotes Parkinson http://purl.obolibrary.org/obo/HP_0001300
T32 2529-2541 Phenotype denotes Hypertension http://purl.obolibrary.org/obo/HP_0000822
T33 2543-2568 Phenotype denotes Transient ischemic attack http://purl.obolibrary.org/obo/HP_0002326
T34 2705-2717 Phenotype denotes Endocarditis http://purl.obolibrary.org/obo/HP_0100584
T35 2772-2787 Phenotype denotes Aortic aneurysm http://purl.obolibrary.org/obo/HP_0004942
T36 2789-2808 Phenotype denotes Atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T37 3060-3064 Phenotype denotes COPD http://purl.obolibrary.org/obo/HP_0006510
T38 3066-3103 Phenotype denotes chronic obstructive pulmonary disease http://purl.obolibrary.org/obo/HP_0006510

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T61 0-49 Sentence denotes Patient Demographics and Clinical Characteristics
T62 50-193 Sentence denotes Table 1 and Table 2 depict the demographic and clinical characteristics of 22 COVID-19 patients on whom postmortem examinations were performed.
T63 194-260 Sentence denotes Of these, 18 had other medical comorbidities (designated group 1).
T64 261-410 Sentence denotes Four patients were healthy prior to hospital admission and had no known medical comorbidities or any cause of immunosuppression (designated group 2).
T65 411-419 Sentence denotes Table 1.
T66 421-464 Sentence denotes Summary of Patient Demographics at Baseline
T67 465-538 Sentence denotes Characteristic Group 1 With Comorbidities Group 2 Without Comorbidities
T68 539-564 Sentence denotes Number of patients 18 4
T69 565-575 Sentence denotes Demography
T70 576-646 Sentence denotes  Age, y, median ± SD (range) 76 ± 15.7 (27–92) 48.5 ± 13.07 (35–65)
T71 647-670 Sentence denotes  Men 12 (66.7) 3 (75)
T72 671-695 Sentence denotes  Women 6 (33.3) 1 (25)
T73 696-707 Sentence denotes Comorbidity
T74 708-759 Sentence denotes  Chronic obstructive pulmonary disease 6 (33.3) …
T75 760-789 Sentence denotes  Cardiac disease 8 (44.5) …
T76 790-814 Sentence denotes  Malignancy 5 (27.8) …
T77 815-841 Sentence denotes  Hypertension 4 (22.3) …
T78 842-864 Sentence denotes  Diabetes 4 (22.3) …
T79 865-891 Sentence denotes  Schizophrenia 1 (5.6) …
T80 892-920 Sentence denotes  Kidney disease 2 (11.2) …
T81 921-961 Sentence denotes Data are No. (%) except where indicated.
T82 962-970 Sentence denotes Table 2.
T83 972-1054 Sentence denotes Demographics, Comorbidities, Duration of Hospital Stay, and Autopsy Cause of Death
T84 1055-1182 Sentence denotes Patient Number Sex, M/F Age, y Onset of Symptoms, d Comorbidities Days in Hospital Before Death Postmortem Cause of Death
T85 1183-1329 Sentence denotes 1 M 81 Not known Hypertension Aortomyocardial sclerosis Ischemic heart disease Cardiomyopathy Aortic aneurysm 4 Cardiorespiratory failure
T86 1330-1478 Sentence denotes 2 F 82 Not known Diabetes Atrioventricular valve prothesis Atrial fibrillation COPD Malignancy Kidney disease 3 Cardiorespiratory failure
T87 1479-1526 Sentence denotes 3 M 92 7 COPD 1 Cardiorespiratory failure
T88 1527-1592 Sentence denotes 4 F 69 Not known Schizophrenia 28 Cardiorespiratory failure
T89 1593-1684 Sentence denotes 5 F 80 Not known Cardiovascular disease Senile dementia 38 Cardiorespiratory failure
T90 1685-1764 Sentence denotes 6 M 92 Not known Cardiovascular disease COPD 3 Cardiorespiratory failure
T91 1765-1818 Sentence denotes 7 F 64 4 Malignancy 2 Cardiorespiratory failure
T92 1819-1898 Sentence denotes 8 M 58 Not known Pulmonary artery thrombosis 4 Cardiorespiratory failure
T93 1899-1964 Sentence denotes 9 M 64 Not known Myelodysplasia 4 Cardiorespiratory failure
T94 1965-2030 Sentence denotes 10 M 82 3 Aortic aneurysm COPD 5 Cardiorespiratory failure
T95 2031-2094 Sentence denotes 11 M 76 Not known Malignancy 30 Cardiorespiratory failure
T96 2095-2205 Sentence denotes 12 M 60 6 Malignancy Hypertension Kidney disease Diabetes COPD Obesity 29 Cardiorespiratory failure
T97 2206-2313 Sentence denotes 13 F 70 Not known Cardiovascular disease Diabetes Psychiatric disorder 43 Cardiorespiratory failure
T98 2314-2421 Sentence denotes 14 M 76 Not known Malignancy COPD Hypertension Cardiovascular disease 33 Cardiorespiratory failure
T99 2422-2487 Sentence denotes 15 F 27 Not known HIV infection 6 Cardiorespiratory failure
T100 2488-2621 Sentence denotes 16 M 82 Not known Parkinson disease Hypertension Transient ischemic attack Prostate hypertrophy 14 Cardiorespiratory failure
T101 2622-2682 Sentence denotes 17 M 57 Not known Diabetes 1 Cardiorespiratory failure
T102 2683-2838 Sentence denotes 18 M 86 Not known Endocarditis caused by Staphylococcus aureus Prostate hypertrophy Aortic aneurysm Atrial fibrillation 1 Cardiorespiratory failure
T103 2839-2888 Sentence denotes 19 M 54 4 NONE 16 Cardiorespiratory failure
T104 2889-2937 Sentence denotes 20 M 35 5 NONE 7 Cardiorespiratory failure
T105 2938-2987 Sentence denotes 21 M 65 7 NONE 12 Cardiorespiratory failure
T106 2988-3045 Sentence denotes 22 F 43 Not known NONE 25 Cardiorespiratory failure
T107 3046-3104 Sentence denotes Abbreviation: COPD, chronic obstructive pulmonary disease.