PMC:7543426 / 2458-3699
Annnotations
LitCovid-PD-FMA-UBERON
{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T19","span":{"begin":574,"end":595},"obj":"Body_part"},{"id":"T20","span":{"begin":696,"end":702},"obj":"Body_part"},{"id":"T21","span":{"begin":704,"end":709},"obj":"Body_part"},{"id":"T22","span":{"begin":715,"end":720},"obj":"Body_part"},{"id":"T23","span":{"begin":781,"end":785},"obj":"Body_part"},{"id":"T24","span":{"begin":1089,"end":1094},"obj":"Body_part"},{"id":"T25","span":{"begin":1136,"end":1140},"obj":"Body_part"}],"attributes":[{"id":"A19","pred":"fma_id","subj":"T19","obj":"http://purl.org/sig/ont/fma/fma7161"},{"id":"A20","pred":"fma_id","subj":"T20","obj":"http://purl.org/sig/ont/fma/fma312401"},{"id":"A21","pred":"fma_id","subj":"T21","obj":"http://purl.org/sig/ont/fma/fma64183"},{"id":"A22","pred":"fma_id","subj":"T22","obj":"http://purl.org/sig/ont/fma/fma9670"},{"id":"A23","pred":"fma_id","subj":"T23","obj":"http://purl.org/sig/ont/fma/fma256135"},{"id":"A24","pred":"fma_id","subj":"T24","obj":"http://purl.org/sig/ont/fma/fma67498"},{"id":"A25","pred":"fma_id","subj":"T25","obj":"http://purl.org/sig/ont/fma/fma256135"}],"text":"Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients). Increased mortality rates have been observed in older people (\u003e70 years of age) and those with comorbidities [2, 3]. Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system. SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10]. Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12]. There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement. Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities."}
LitCovid-PD-UBERON
{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T18","span":{"begin":574,"end":595},"obj":"Body_part"},{"id":"T19","span":{"begin":696,"end":702},"obj":"Body_part"},{"id":"T20","span":{"begin":704,"end":709},"obj":"Body_part"},{"id":"T21","span":{"begin":715,"end":720},"obj":"Body_part"},{"id":"T22","span":{"begin":1089,"end":1094},"obj":"Body_part"}],"attributes":[{"id":"A18","pred":"uberon_id","subj":"T18","obj":"http://purl.obolibrary.org/obo/UBERON_0004535"},{"id":"A19","pred":"uberon_id","subj":"T19","obj":"http://purl.obolibrary.org/obo/UBERON_0007311"},{"id":"A20","pred":"uberon_id","subj":"T20","obj":"http://purl.obolibrary.org/obo/UBERON_0001988"},{"id":"A21","pred":"uberon_id","subj":"T21","obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"A22","pred":"uberon_id","subj":"T22","obj":"http://purl.obolibrary.org/obo/UBERON_0000062"}],"text":"Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients). Increased mortality rates have been observed in older people (\u003e70 years of age) and those with comorbidities [2, 3]. Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system. SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10]. Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12]. There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement. Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities."}
LitCovid-PD-MONDO
{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T31","span":{"begin":59,"end":67},"obj":"Disease"},{"id":"T32","span":{"begin":465,"end":473},"obj":"Disease"},{"id":"T33","span":{"begin":482,"end":490},"obj":"Disease"},{"id":"T34","span":{"begin":597,"end":605},"obj":"Disease"},{"id":"T35","span":{"begin":819,"end":827},"obj":"Disease"},{"id":"T36","span":{"begin":855,"end":864},"obj":"Disease"},{"id":"T37","span":{"begin":1042,"end":1050},"obj":"Disease"},{"id":"T38","span":{"begin":1200,"end":1208},"obj":"Disease"}],"attributes":[{"id":"A31","pred":"mondo_id","subj":"T31","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A32","pred":"mondo_id","subj":"T32","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A33","pred":"mondo_id","subj":"T33","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A34","pred":"mondo_id","subj":"T34","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A35","pred":"mondo_id","subj":"T35","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A36","pred":"mondo_id","subj":"T36","obj":"http://purl.obolibrary.org/obo/MONDO_0005550"},{"id":"A37","pred":"mondo_id","subj":"T37","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"},{"id":"A38","pred":"mondo_id","subj":"T38","obj":"http://purl.obolibrary.org/obo/MONDO_0100096"}],"text":"Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients). Increased mortality rates have been observed in older people (\u003e70 years of age) and those with comorbidities [2, 3]. Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system. SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10]. Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12]. There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement. Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities."}
LitCovid-PD-CLO
{"project":"LitCovid-PD-CLO","denotations":[{"id":"T39","span":{"begin":80,"end":81},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T40","span":{"begin":505,"end":506},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T41","span":{"begin":574,"end":595},"obj":"http://purl.obolibrary.org/obo/UBERON_0004535"},{"id":"T42","span":{"begin":574,"end":595},"obj":"http://www.ebi.ac.uk/efo/EFO_0000791"},{"id":"T43","span":{"begin":608,"end":611},"obj":"http://purl.obolibrary.org/obo/CLO_0051582"},{"id":"T44","span":{"begin":629,"end":630},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T45","span":{"begin":715,"end":720},"obj":"http://purl.obolibrary.org/obo/UBERON_0000178"},{"id":"T46","span":{"begin":715,"end":720},"obj":"http://www.ebi.ac.uk/efo/EFO_0000296"},{"id":"T47","span":{"begin":775,"end":785},"obj":"http://purl.obolibrary.org/obo/UBERON_0013702"},{"id":"T48","span":{"begin":915,"end":917},"obj":"http://purl.obolibrary.org/obo/CLO_0053733"},{"id":"T49","span":{"begin":933,"end":934},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T50","span":{"begin":1089,"end":1094},"obj":"http://purl.obolibrary.org/obo/UBERON_0003103"},{"id":"T51","span":{"begin":1130,"end":1140},"obj":"http://purl.obolibrary.org/obo/UBERON_0013702"},{"id":"T52","span":{"begin":1168,"end":1170},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"}],"text":"Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients). Increased mortality rates have been observed in older people (\u003e70 years of age) and those with comorbidities [2, 3]. Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system. SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10]. Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12]. There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement. Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities."}
LitCovid-PubTator
{"project":"LitCovid-PubTator","denotations":[{"id":"105","span":{"begin":167,"end":175},"obj":"Species"},{"id":"106","span":{"begin":195,"end":203},"obj":"Species"},{"id":"107","span":{"begin":231,"end":239},"obj":"Species"},{"id":"108","span":{"begin":296,"end":302},"obj":"Species"},{"id":"109","span":{"begin":465,"end":475},"obj":"Species"},{"id":"110","span":{"begin":482,"end":490},"obj":"Species"},{"id":"111","span":{"begin":597,"end":607},"obj":"Species"},{"id":"112","span":{"begin":799,"end":807},"obj":"Species"},{"id":"113","span":{"begin":1179,"end":1187},"obj":"Species"},{"id":"114","span":{"begin":59,"end":67},"obj":"Disease"},{"id":"115","span":{"begin":252,"end":261},"obj":"Disease"},{"id":"116","span":{"begin":507,"end":526},"obj":"Disease"},{"id":"117","span":{"begin":819,"end":827},"obj":"Disease"},{"id":"118","span":{"begin":855,"end":864},"obj":"Disease"},{"id":"119","span":{"begin":1042,"end":1050},"obj":"Disease"},{"id":"120","span":{"begin":1192,"end":1196},"obj":"Disease"},{"id":"121","span":{"begin":1200,"end":1208},"obj":"Disease"}],"attributes":[{"id":"A105","pred":"tao:has_database_id","subj":"105","obj":"Tax:9606"},{"id":"A106","pred":"tao:has_database_id","subj":"106","obj":"Tax:9606"},{"id":"A107","pred":"tao:has_database_id","subj":"107","obj":"Tax:9606"},{"id":"A108","pred":"tao:has_database_id","subj":"108","obj":"Tax:9606"},{"id":"A109","pred":"tao:has_database_id","subj":"109","obj":"Tax:2697049"},{"id":"A110","pred":"tao:has_database_id","subj":"110","obj":"Tax:694009"},{"id":"A111","pred":"tao:has_database_id","subj":"111","obj":"Tax:2697049"},{"id":"A112","pred":"tao:has_database_id","subj":"112","obj":"Tax:9606"},{"id":"A113","pred":"tao:has_database_id","subj":"113","obj":"Tax:9606"},{"id":"A114","pred":"tao:has_database_id","subj":"114","obj":"MESH:C000657245"},{"id":"A115","pred":"tao:has_database_id","subj":"115","obj":"MESH:D003643"},{"id":"A116","pred":"tao:has_database_id","subj":"116","obj":"MESH:D004194"},{"id":"A117","pred":"tao:has_database_id","subj":"117","obj":"MESH:C000657245"},{"id":"A118","pred":"tao:has_database_id","subj":"118","obj":"MESH:D007239"},{"id":"A119","pred":"tao:has_database_id","subj":"119","obj":"MESH:C000657245"},{"id":"A120","pred":"tao:has_database_id","subj":"120","obj":"MESH:D003643"},{"id":"A121","pred":"tao:has_database_id","subj":"121","obj":"MESH:C000657245"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients). Increased mortality rates have been observed in older people (\u003e70 years of age) and those with comorbidities [2, 3]. Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system. SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10]. Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12]. There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement. Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities."}
LitCovid-PD-GO-BP
{"project":"LitCovid-PD-GO-BP","denotations":[{"id":"T1","span":{"begin":873,"end":884},"obj":"http://purl.obolibrary.org/obo/GO_0065007"}],"text":"Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients). Increased mortality rates have been observed in older people (\u003e70 years of age) and those with comorbidities [2, 3]. Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system. SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10]. Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12]. There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement. Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities."}
LitCovid-sentences
{"project":"LitCovid-sentences","denotations":[{"id":"T25","span":{"begin":0,"end":241},"obj":"Sentence"},{"id":"T26","span":{"begin":242,"end":358},"obj":"Sentence"},{"id":"T27","span":{"begin":359,"end":596},"obj":"Sentence"},{"id":"T28","span":{"begin":597,"end":763},"obj":"Sentence"},{"id":"T29","span":{"begin":764,"end":923},"obj":"Sentence"},{"id":"T30","span":{"begin":924,"end":1107},"obj":"Sentence"},{"id":"T31","span":{"begin":1108,"end":1241},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients). Increased mortality rates have been observed in older people (\u003e70 years of age) and those with comorbidities [2, 3]. Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system. SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10]. Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12]. There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement. Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities."}