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PMC:7543426 / 2458-3699 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T19 574-595 Body_part denotes cardiovascular system http://purl.org/sig/ont/fma/fma7161
T20 696-702 Body_part denotes sputum http://purl.org/sig/ont/fma/fma312401
T21 704-709 Body_part denotes feces http://purl.org/sig/ont/fma/fma64183
T22 715-720 Body_part denotes blood http://purl.org/sig/ont/fma/fma9670
T23 781-785 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T24 1089-1094 Body_part denotes organ http://purl.org/sig/ont/fma/fma67498
T25 1136-1140 Body_part denotes body http://purl.org/sig/ont/fma/fma256135

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T18 574-595 Body_part denotes cardiovascular system http://purl.obolibrary.org/obo/UBERON_0004535
T19 696-702 Body_part denotes sputum http://purl.obolibrary.org/obo/UBERON_0007311
T20 704-709 Body_part denotes feces http://purl.obolibrary.org/obo/UBERON_0001988
T21 715-720 Body_part denotes blood http://purl.obolibrary.org/obo/UBERON_0000178
T22 1089-1094 Body_part denotes organ http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T31 59-67 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T32 465-473 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T33 482-490 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T34 597-605 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T35 819-827 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T36 855-864 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550
T37 1042-1050 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T38 1200-1208 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T39 80-81 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T40 505-506 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T41 574-595 http://purl.obolibrary.org/obo/UBERON_0004535 denotes cardiovascular system
T42 574-595 http://www.ebi.ac.uk/efo/EFO_0000791 denotes cardiovascular system
T43 608-611 http://purl.obolibrary.org/obo/CLO_0051582 denotes has
T44 629-630 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T45 715-720 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T46 715-720 http://www.ebi.ac.uk/efo/EFO_0000296 denotes blood
T47 775-785 http://purl.obolibrary.org/obo/UBERON_0013702 denotes whole-body
T48 915-917 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T49 933-934 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T50 1089-1094 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organ
T51 1130-1140 http://purl.obolibrary.org/obo/UBERON_0013702 denotes whole-body
T52 1168-1170 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
105 167-175 Species denotes patients Tax:9606
106 195-203 Species denotes patients Tax:9606
107 231-239 Species denotes patients Tax:9606
108 296-302 Species denotes people Tax:9606
109 465-475 Species denotes SARS-CoV-2 Tax:2697049
110 482-490 Species denotes SARS-CoV Tax:694009
111 597-607 Species denotes SARS-CoV-2 Tax:2697049
112 799-807 Species denotes patients Tax:9606
113 1179-1187 Species denotes patients Tax:9606
114 59-67 Disease denotes COVID-19 MESH:C000657245
115 252-261 Disease denotes mortality MESH:D003643
116 507-526 Disease denotes multisystem disease MESH:D004194
117 819-827 Disease denotes COVID-19 MESH:C000657245
118 855-864 Disease denotes infection MESH:D007239
119 1042-1050 Disease denotes COVID-19 MESH:C000657245
120 1192-1196 Disease denotes died MESH:D003643
121 1200-1208 Disease denotes COVID-19 MESH:C000657245

LitCovid-PD-GO-BP

Id Subject Object Predicate Lexical cue
T1 873-884 http://purl.obolibrary.org/obo/GO_0065007 denotes regulations

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T25 0-241 Sentence denotes Clinical and epidemiological studies have established that COVID-19 presents as a spectrum of clinical manifestations from asymptomatic, to mild illness (up to 80% of patients), moderate (15% of patients), to severe illness (5% of patients).
T26 242-358 Sentence denotes Increased mortality rates have been observed in older people (>70 years of age) and those with comorbidities [2, 3].
T27 359-596 Sentence denotes Reports from individual or small autopsy case studies [4–6] or limited postmortem studies [7–9] show that SARS-CoV-2, like SARS-CoV-1 in 2003, is a multisystem disease that predominantly affects the respiratory and cardiovascular system.
T28 597-763 Sentence denotes SARS-CoV-2 has been detected in a range of clinical samples, such as bronchoalveolar lavage fluid, sputum, feces, and blood, indicating widespread dissemination [10].
T29 764-923 Sentence denotes Performing whole-body autopsies in patients who die of COVID-19 remains challenging due to infection control regulations and other logistical reasons [11, 12].
T30 924-1107 Sentence denotes There is a need for more detailed and larger autopsy case series to further define the pathological manifestations of COVID-19 [13] and determine the full extent of organ involvement.
T31 1108-1241 Sentence denotes Here, we reported the whole-body postmortem examinations of 22 Italian patients who died of COVID-19, 4 of whom had no comorbidities.