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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T13 764-769 Body_part denotes brain http://purl.org/sig/ont/fma/fma50801
T1 214-220 Body_part denotes tissue http://purl.org/sig/ont/fma/fma9637
T2 292-296 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T3 324-328 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T4 457-468 Body_part denotes body organs http://purl.org/sig/ont/fma/fma45734
T5 457-461 Body_part denotes body http://purl.org/sig/ont/fma/fma256135
T6 682-689 Body_part denotes Tissues http://purl.org/sig/ont/fma/fma9637
T7 699-703 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T8 705-710 Body_part denotes heart http://purl.org/sig/ont/fma/fma7088
T9 712-717 Body_part denotes liver http://purl.org/sig/ont/fma/fma7197
T10 719-725 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T11 727-733 Body_part denotes spleen http://purl.org/sig/ont/fma/fma7196
T12 739-750 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608
T14 791-795 Body_part denotes lung http://purl.org/sig/ont/fma/fma7195
T15 796-803 Body_part denotes tissues http://purl.org/sig/ont/fma/fma9637
T16 1028-1034 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203
T17 1049-1060 Body_part denotes bone marrow http://purl.org/sig/ont/fma/fma9608

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T1 214-220 Body_part denotes tissue http://purl.obolibrary.org/obo/UBERON_0000479
T2 292-296 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T3 310-316 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T4 462-468 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062
T5 699-703 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T6 705-710 Body_part denotes heart http://purl.obolibrary.org/obo/UBERON_0000948
T7 712-717 Body_part denotes liver http://purl.obolibrary.org/obo/UBERON_0002107
T8 719-725 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T9 727-733 Body_part denotes spleen http://purl.obolibrary.org/obo/UBERON_0002106
T10 739-750 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T11 764-769 Body_part denotes brain http://purl.obolibrary.org/obo/UBERON_0000955
T12 791-795 Body_part denotes lung http://purl.obolibrary.org/obo/UBERON_0002048
T13 1028-1034 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113
T14 1049-1060 Body_part denotes bone marrow http://purl.obolibrary.org/obo/UBERON_0002371
T15 1320-1326 Body_part denotes organs http://purl.obolibrary.org/obo/UBERON_0000062

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T2 66-90 Disease denotes coronavirus disease-2019 http://purl.obolibrary.org/obo/MONDO_0100096
T3 92-100 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T4 140-187 Disease denotes severe acute respiratory syndrome coronavirus-2 http://purl.obolibrary.org/obo/MONDO_0100096
T5 140-173 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091
T6 189-197 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T7 348-356 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T8 435-443 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T9 513-521 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T10 613-623 Disease denotes Infectious http://purl.obolibrary.org/obo/MONDO_0005550
T11 863-871 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T12 1092-1098 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T13 1103-1113 Disease denotes thrombosis http://purl.obolibrary.org/obo/MONDO_0000831
T14 1238-1246 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T15 1249-1258 Disease denotes infection http://purl.obolibrary.org/obo/MONDO_0005550

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T2 292-296 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T3 292-296 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T4 310-316 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T5 318-328 http://purl.obolibrary.org/obo/UBERON_0013702 denotes Whole-body
T6 462-468 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs
T7 496-498 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T8 523-525 http://purl.obolibrary.org/obo/CLO_0050510 denotes 18
T9 699-703 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T10 699-703 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T11 705-710 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T12 705-710 http://purl.obolibrary.org/obo/UBERON_0007100 denotes heart
T13 705-710 http://purl.obolibrary.org/obo/UBERON_0015228 denotes heart
T14 705-710 http://www.ebi.ac.uk/efo/EFO_0000815 denotes heart
T15 712-717 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T16 712-717 http://www.ebi.ac.uk/efo/EFO_0000887 denotes liver
T17 719-725 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T18 719-725 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T19 719-725 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T20 727-733 http://purl.obolibrary.org/obo/UBERON_0002106 denotes spleen
T21 739-743 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T22 764-769 http://purl.obolibrary.org/obo/UBERON_0000955 denotes brain
T23 764-769 http://www.ebi.ac.uk/efo/EFO_0000302 denotes brain
T24 791-795 http://purl.obolibrary.org/obo/UBERON_0002048 denotes lung
T25 791-795 http://www.ebi.ac.uk/efo/EFO_0000934 denotes lung
T26 1028-1034 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T27 1028-1034 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T28 1028-1034 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney
T29 1049-1053 http://purl.obolibrary.org/obo/UBERON_0002481 denotes bone
T30 1320-1329 http://purl.obolibrary.org/obo/UBERON_0003103 denotes organs in

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
11 140-187 Species denotes severe acute respiratory syndrome coronavirus-2 Tax:2697049
12 189-199 Species denotes SARS-CoV-2 Tax:2697049
13 357-365 Species denotes patients Tax:9606
14 66-90 Disease denotes coronavirus disease-2019 MESH:C000657245
15 92-100 Disease denotes COVID-19 MESH:C000657245
16 122-130 Disease denotes zoonotic MESH:D015047
17 348-356 Disease denotes COVID-19 MESH:C000657245
23 435-445 Species denotes SARS-CoV-2 Tax:2697049
24 499-507 Species denotes patients Tax:9606
25 513-521 Disease denotes COVID-19 MESH:C000657245
26 578-582 Disease denotes died MESH:D003643
27 613-632 Disease denotes Infectious Diseases MESH:D003141
33 1165-1173 Species denotes patients Tax:9606
34 863-871 Disease denotes COVID-19 MESH:C000657245
35 1049-1072 Disease denotes bone marrow involvement MESH:D001855
36 1078-1098 Disease denotes microvascular injury MESH:D017566
37 1103-1113 Disease denotes thrombosis MESH:D013927
41 1330-1338 Species denotes patients Tax:9606
42 1238-1258 Disease denotes SARS-CoV-2 infection MESH:C000657245
43 1266-1285 Disease denotes multisystem disease MESH:D004194

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T4 0-8 Sentence denotes Abstract
T5 10-20 Sentence denotes Background
T6 21-317 Sentence denotes Descriptions of the pathological features of coronavirus disease-2019 (COVID-19) caused by the novel zoonotic pathogen severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) emanate from tissue biopsies, case reports, and small postmortem studies restricted to the lung and specific organs.
T7 318-383 Sentence denotes Whole-body autopsy studies of COVID-19 patients have been sparse.
T8 385-392 Sentence denotes Methods
T9 393-681 Sentence denotes To further define the pathology caused by SARS-CoV-2 across all body organs, we performed autopsies on 22 patients with COVID-19 (18 with comorbidities and 4 without comorbidities) who died at the National Institute for Infectious Diseases Lazzaro Spallanzani-IRCCS Hospital, Rome, Italy.
T10 682-785 Sentence denotes Tissues from the lung, heart, liver, kidney, spleen, and bone marrow (but not the brain) were examined.
T11 786-853 Sentence denotes Only lung tissues were subject to transmission electron microscopy.
T12 855-862 Sentence denotes Results
T13 863-901 Sentence denotes COVID-19 caused multisystem pathology.
T14 902-979 Sentence denotes Pulmonary and cardiovascular involvement were dominant pathological features.
T15 980-1133 Sentence denotes Extrapulmonary manifestations included hepatic, kidney, splenic, and bone marrow involvement, and microvascular injury and thrombosis were also detected.
T16 1134-1224 Sentence denotes These findings were similar in patients with or without preexisting medical comorbidities.
T17 1226-1237 Sentence denotes Conclusions
T18 1238-1370 Sentence denotes SARS-CoV-2 infection causes multisystem disease and significant pathology in most organs in patients with and without comorbidities.