PMC:7543325 / 15275-16109
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T24 | 167-170 | Body_part | denotes | rib | http://purl.org/sig/ont/fma/fma7574 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T25 | 167-170 | Body_part | denotes | rib | http://purl.obolibrary.org/obo/UBERON_0002228 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T127 | 72-80 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T128 | 110-118 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T129 | 146-152 | Disease | denotes | trauma | http://purl.obolibrary.org/obo/MONDO_0021178 |
| T130 | 396-398 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T131 | 415-423 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T132 | 467-469 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T133 | 499-507 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T134 | 510-519 | Disease | denotes | pneumonia | http://purl.obolibrary.org/obo/MONDO_0005249 |
| T135 | 572-574 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T136 | 743-751 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T137 | 769-771 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
| T138 | 799-801 | Disease | denotes | he | http://purl.obolibrary.org/obo/MONDO_0017319 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T127 | 19-21 | http://purl.obolibrary.org/obo/CLO_0001302 | denotes | 34 |
| T128 | 167-170 | http://purl.obolibrary.org/obo/UBERON_0002228 | denotes | rib |
| T129 | 382-383 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T130 | 403-409 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | tested |
| T131 | 584-585 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T132 | 632-635 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
| T133 | 734-738 | http://purl.obolibrary.org/obo/UBERON_0000473 | denotes | test |
| T134 | 772-775 | http://purl.obolibrary.org/obo/CLO_0051582 | denotes | has |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T14 | 819-825 | Chemical | denotes | oxygen | http://purl.obolibrary.org/obo/CHEBI_25805 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 374 | 22-30 | Species | denotes | patients | Tax:9606 |
| 375 | 311-318 | Species | denotes | patient | Tax:9606 |
| 376 | 415-425 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 377 | 539-546 | Species | denotes | patient | Tax:9606 |
| 378 | 624-631 | Species | denotes | patient | Tax:9606 |
| 379 | 743-753 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 380 | 819-825 | Chemical | denotes | oxygen | MESH:D010100 |
| 381 | 72-80 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 382 | 110-118 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 383 | 146-152 | Disease | denotes | trauma | MESH:D014947 |
| 384 | 171-202 | Disease | denotes | fractures and right haemothorax | MESH:D050723 |
| 385 | 347-352 | Disease | denotes | fever | MESH:D005334 |
| 386 | 357-378 | Disease | denotes | pulmonary infiltrates | MESH:D017254 |
| 387 | 504-519 | Disease | denotes | CoV-2 pneumonia | MESH:C000657245 |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T46 | 158-180 | Phenotype | denotes | multiple rib fractures | http://purl.obolibrary.org/obo/HP_0006640 |
| T47 | 347-352 | Phenotype | denotes | fever | http://purl.obolibrary.org/obo/HP_0001945 |
| T48 | 357-378 | Phenotype | denotes | pulmonary infiltrates | http://purl.obolibrary.org/obo/HP_0002113 |
| T49 | 510-519 | Phenotype | denotes | pneumonia | http://purl.obolibrary.org/obo/HP_0002090 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T163 | 0-119 | Sentence | denotes | In total, 2 of the 34 patients (5.88%) who underwent surgery during the COVID-19 pandemic were diagnosed with COVID-19. |
| T164 | 120-272 | Sentence | denotes | One of the 2 had thoracic trauma with multiple rib fractures and right haemothorax and required an emergency thoracotomy for damage control on 15 March. |
| T165 | 273-520 | Sentence | denotes | On the seventh postoperative day, the patient started showing symptoms of fever and pulmonary infiltrates on a CT scan, so he was tested with SARS-CoV-2 PCR, the results of which were positive; he was diagnosed with bilateral SARS-CoV-2 pneumonia. |
| T166 | 521-599 | Sentence | denotes | The course of the patient’s disease was difficult: he required a tracheostomy. |
| T167 | 600-707 | Sentence | denotes | As of this writing, the patient has been discharged from the intensive care unit but is still hospitalized. |
| T168 | 708-834 | Sentence | denotes | The results of the latest test for SARS-CoV-2 were negative; he has been decannulated, and he does not require oxygen therapy. |