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PMC:7543325 / 11920-13590 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T18 559-563 Body_part denotes Lung http://purl.org/sig/ont/fma/fma7195
T19 1527-1533 Body_part denotes kidney http://purl.org/sig/ont/fma/fma7203

LitCovid-PD-UBERON

Id Subject Object Predicate Lexical cue uberon_id
T19 559-563 Body_part denotes Lung http://purl.obolibrary.org/obo/UBERON_0002048
T20 1527-1533 Body_part denotes kidney http://purl.obolibrary.org/obo/UBERON_0002113

LitCovid-PD-MONDO

Id Subject Object Predicate Lexical cue mondo_id
T97 56-64 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T98 252-260 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T99 288-296 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T100 313-321 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T101 672-675 Disease denotes AKI http://purl.obolibrary.org/obo/MONDO_0002492
T102 977-983 Disease denotes trauma http://purl.obolibrary.org/obo/MONDO_0021178
T103 1044-1053 Disease denotes Pneumonia http://purl.obolibrary.org/obo/MONDO_0005249
T104 1060-1073 Disease denotes Mediastinitis http://purl.obolibrary.org/obo/MONDO_0004492
T105 1280-1288 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T106 1317-1325 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T107 1495-1514 Disease denotes atrial fibrillation http://purl.obolibrary.org/obo/MONDO_0004981
T108 1516-1519 Disease denotes AKI http://purl.obolibrary.org/obo/MONDO_0002492
T109 1521-1540 Disease denotes acute kidney injury http://purl.obolibrary.org/obo/MONDO_0002492
T110 1534-1540 Disease denotes injury http://purl.obolibrary.org/obo/MONDO_0021178
T111 1542-1550 Disease denotes COVID-19 http://purl.obolibrary.org/obo/MONDO_0100096
T112 1552-1576 Disease denotes coronavirus disease 2019 http://purl.obolibrary.org/obo/MONDO_0100096
T113 1610-1618 Disease denotes SARS-CoV http://purl.obolibrary.org/obo/MONDO_0005091
T114 1622-1669 Disease denotes severe acute respiratory syndrome coronavirus 2 http://purl.obolibrary.org/obo/MONDO_0100096
T115 1622-1655 Disease denotes severe acute respiratory syndrome http://purl.obolibrary.org/obo/MONDO_0005091

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T99 355-357 http://purl.obolibrary.org/obo/CLO_0001302 denotes 34
T100 359-361 http://purl.obolibrary.org/obo/CLO_0050507 denotes 22
T101 463-469 http://purl.obolibrary.org/obo/CLO_0001360 denotes 4 (12)
T102 479-483 http://purl.obolibrary.org/obo/CLO_0050507 denotes 2 2
T103 530-534 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T104 559-563 http://purl.obolibrary.org/obo/UBERON_0002048 denotes Lung
T105 559-563 http://www.ebi.ac.uk/efo/EFO_0000934 denotes Lung
T106 654-658 http://purl.obolibrary.org/obo/CLO_0051741 denotes c 1
T107 677-681 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T108 776-778 http://purl.obolibrary.org/obo/CLO_0053733 denotes 11
T109 1038-1042 http://purl.obolibrary.org/obo/CLO_0002960 denotes f 1
T110 1091-1095 http://purl.obolibrary.org/obo/CLO_0053733 denotes 1 1
T111 1113-1114 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T112 1174-1175 http://purl.obolibrary.org/obo/CLO_0001021 denotes b
T113 1328-1332 http://purl.obolibrary.org/obo/UBERON_0000473 denotes test
T114 1527-1533 http://purl.obolibrary.org/obo/UBERON_0002113 denotes kidney
T115 1527-1533 http://www.ebi.ac.uk/efo/EFO_0000927 denotes kidney
T116 1527-1533 http://www.ebi.ac.uk/efo/EFO_0000929 denotes kidney

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T12 808-810 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807
T13 1491-1493 Chemical denotes AF http://purl.obolibrary.org/obo/CHEBI_73807

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
296 252-260 Disease denotes COVID-19 MESH:C000657245
297 288-296 Disease denotes COVID-19 MESH:C000657245
298 313-343 Disease denotes COVID-19 Yes Type T COVID MESH:C000657245
299 808-810 Disease denotes AF MESH:D001281
300 977-990 Disease denotes trauma damage MESH:D014947
301 1044-1053 Disease denotes Pneumonia MESH:D011014
304 36-44 Species denotes patients Tax:9606
305 56-64 Disease denotes COVID-19 MESH:C000657245
311 1177-1186 Disease denotes Mortality MESH:D003643
312 1240-1249 Disease denotes mortality MESH:D003643
313 1255-1260 Disease denotes COVID MESH:C000657245
314 1263-1272 Disease denotes mortality MESH:D003643
315 1280-1288 Disease denotes COVID-19 MESH:C000657245
317 1317-1327 Species denotes SARS-CoV-2 Tax:2697049
324 1610-1620 Species denotes SARS-CoV-2 Tax:2697049
325 1622-1669 Species denotes severe acute respiratory syndrome coronavirus 2 Tax:2697049
326 1491-1493 Disease denotes AF MESH:D001281
327 1495-1514 Disease denotes atrial fibrillation MESH:D001281
328 1521-1540 Disease denotes acute kidney injury MESH:D058186
329 1552-1576 Disease denotes coronavirus disease 2019 MESH:C000657245

LitCovid-PD-HP

Id Subject Object Predicate Lexical cue hp_id
T39 1044-1053 Phenotype denotes Pneumonia http://purl.obolibrary.org/obo/HP_0002090
T40 1495-1514 Phenotype denotes atrial fibrillation http://purl.obolibrary.org/obo/HP_0005110
T41 1521-1540 Phenotype denotes acute kidney injury http://purl.obolibrary.org/obo/HP_0001919

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T127 0-8 Sentence denotes Table 3:
T128 10-73 Sentence denotes Outcomes of postoperative patients during the COVID-19 pandemic
T129 74-162 Sentence denotes Procedure N (%) Period Hospitalization (days) Postoperative complicationsa Deathsb
T130 163-205 Sentence denotes Prescreening period Post-screening period
T131 206-344 Sentence denotes 1–19 March 20 March– 5 April Diagnostic PCR COVID-19 6–24 April Screening PCR COVID-19 Diagnostic PCR COVID-19 Yes Type T COVID+
T132 345-426 Sentence denotes Total % 34 22 (65%) 2 (6%) (−) (+) 10 (29%) All negative 4.72 4 2 1
T133 427-497 Sentence denotes Elective surgery Mediastinoscopy 4 (12) 2 0 2 2 1 0 0 0
T134 498-558 Sentence denotes Pleural biopsy 2 (6) 1 0 1 1 5.5 1 Bleeding 1 0
T135 559-606 Sentence denotes Lung biopsy 2 (6) 2 0 0 0 4 0 0 0
T136 607-681 Sentence denotes Wedge segmentectomy 8 (24) 7 0 1 (9 days)c 1 1 3.9 1 AKI 1 1
T137 682-752 Sentence denotes Anatomical sublobar resection 1 (3) 1 0 0 0 None 3 0 0 0
T138 753-816 Sentence denotes Anatomical lobectomy 11 (32) 6 0 5 5 5.3 1 AF 0 0
T139 817-879 Sentence denotes Extrapleural pneumonectomy 1 (3) 1 0 0 0 8 0 0 0
T140 880-947 Sentence denotes Urgent surgeryd Bullectomy 3 (9) 1 2 1 0 0 8.3 0 0 0
T141 948-1059 Sentence denotes Emergency surgerye Thoracic trauma damage control 1 (3) 1 0 1 (7 days)c 0 0 (−)f 1 Pneumonia 0 0
T142 1060-1112 Sentence denotes Mediastinitis 1 (3) 0 0 1 1 (−)f 0 0 0
T143 1113-1173 Sentence denotes a Early postoperative complications during hospitalization.
T144 1174-1290 Sentence denotes b Mortality within 30 days after surgery was divided in T (total mortality) and COVID+ (mortality due to COVID-19).
T145 1291-1355 Sentence denotes c Days after surgery PCR SARS-CoV-2 test results were positive.
T146 1356-1396 Sentence denotes d Urgent surgery: not life-threatening.
T147 1397-1436 Sentence denotes e Emergency surgery: life-threatening.
T148 1437-1490 Sentence denotes f Still hospitalized at the writing of this article.
T149 1491-1670 Sentence denotes AF: atrial fibrillation; AKI: acute kidney injury; COVID-19: coronavirus disease 2019; PCR: polymerase chain reaction; SARS-CoV-2: severe acute respiratory syndrome coronavirus 2.