PMC:7534206 / 2111-3629
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T2 | 309-313 | Body_part | denotes | lung | http://purl.org/sig/ont/fma/fma7195 |
| T3 | 338-343 | Body_part | denotes | organ | http://purl.org/sig/ont/fma/fma67498 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T5 | 309-313 | Body_part | denotes | lung | http://purl.obolibrary.org/obo/UBERON_0002048 |
| T6 | 338-343 | Body_part | denotes | organ | http://purl.obolibrary.org/obo/UBERON_0000062 |
| T7 | 1466-1472 | Body_part | denotes | vessel | http://purl.obolibrary.org/obo/UBERON_0000055 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T24 | 42-89 | Disease | denotes | severe acute respiratory syndrome coronavirus 2 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T25 | 42-75 | Disease | denotes | severe acute respiratory syndrome | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T26 | 91-99 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T27 | 214-238 | Disease | denotes | coronavirus disease 2019 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T28 | 240-248 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T29 | 475-481 | Disease | denotes | stroke | http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057 |
| T31 | 485-493 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T32 | 798-804 | Disease | denotes | stroke | http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057 |
| T34 | 808-816 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T35 | 829-838 | Disease | denotes | influenza | http://purl.obolibrary.org/obo/MONDO_0005812 |
| T36 | 952-960 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T37 | 1131-1139 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
| T38 | 1308-1316 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T39 | 1483-1490 | Disease | denotes | strokes | http://purl.obolibrary.org/obo/MONDO_0005098|http://purl.obolibrary.org/obo/MONDO_0011057 |
| T41 | 1509-1517 | Disease | denotes | COVID-19 | http://purl.obolibrary.org/obo/MONDO_0100096 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T19 | 179-191 | http://purl.obolibrary.org/obo/OBI_0000245 | denotes | Organization |
| T20 | 266-267 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T21 | 280-282 | http://purl.obolibrary.org/obo/CLO_0053733 | denotes | 11 |
| T22 | 309-313 | http://purl.obolibrary.org/obo/UBERON_0002048 | denotes | lung |
| T23 | 309-313 | http://www.ebi.ac.uk/efo/EFO_0000934 | denotes | lung |
| T24 | 338-343 | http://purl.obolibrary.org/obo/UBERON_0003103 | denotes | organ |
| T25 | 349-354 | http://purl.obolibrary.org/obo/NCBITaxon_10239 | denotes | virus |
| T26 | 395-396 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T27 | 695-696 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T28 | 763-764 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T29 | 876-877 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T30 | 1114-1115 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T31 | 1277-1278 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T32 | 1421-1422 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | a |
| T33 | 1466-1472 | http://purl.obolibrary.org/obo/UBERON_0000055 | denotes | vessel |
LitCovid-PD-HP
| Id | Subject | Object | Predicate | Lexical cue | hp_id |
|---|---|---|---|---|---|
| T6 | 475-481 | Phenotype | denotes | stroke | http://purl.obolibrary.org/obo/HP_0001297 |
| T7 | 789-804 | Phenotype | denotes | ischemic stroke | http://purl.obolibrary.org/obo/HP_0002140 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T23 | 0-12 | Sentence | denotes | Introduction |
| T24 | 13-161 | Sentence | denotes | In six months, the number of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) cases exceeded six million, with more than 360,000 deaths. |
| T25 | 162-448 | Sentence | denotes | The World Health Organization named the disease the coronavirus disease 2019 (COVID-19) and declared it a pandemic on 11 March 2020.1 Although the lung is the primary affected organ, the virus is neurovirulent and neuroinvasive with a growing recognition of neurological manifestations. |
| T26 | 449-840 | Sentence | denotes | The reported incidence of stroke in COVID-19 hospitalized patients is 0.9–2%,2,3 with an increased incidence in the young.4 More important than the increased incidence, is the poor outcome and high mortality rate, even with optimal treatment.5,6 A recent cross-sectional comparative study from New York identified a 7.5-fold higher rate of ischemic stroke in COVID-19 compared to influenza.3 |
| T27 | 841-1102 | Sentence | denotes | In the current pandemic situation, a better understanding of the pathophysiological mechanisms associated with COVID-19 and characterization of cerebrovascular pathologies and outcomes is critical not only to estimate the risk but also to guide decision making. |
| T28 | 1103-1233 | Sentence | denotes | We present a case series of COVID-19 patients from two different health systems presenting with acute cerebrovascular pathologies. |
| T29 | 1234-1394 | Sentence | denotes | We also reviewed the literature to present a comprehensive summary of the SARS-CoV-2-induced factors that are associated with acute cerebrovascular pathologies. |
| T30 | 1395-1518 | Sentence | denotes | In addition, we performed a pooled analysis of published data on large vessel occlusion strokes in the setting of COVID-19. |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 87 | 42-89 | Species | denotes | severe acute respiratory syndrome coronavirus 2 | Tax:2697049 |
| 88 | 91-101 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 89 | 507-515 | Species | denotes | patients | Tax:9606 |
| 90 | 154-160 | Disease | denotes | deaths | MESH:D003643 |
| 91 | 214-238 | Disease | denotes | coronavirus disease 2019 | MESH:C000657245 |
| 92 | 240-248 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 93 | 475-481 | Disease | denotes | stroke | MESH:D020521 |
| 94 | 485-493 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 95 | 647-656 | Disease | denotes | mortality | MESH:D003643 |
| 96 | 789-804 | Disease | denotes | ischemic stroke | MESH:D002544 |
| 97 | 808-816 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 107 | 1140-1148 | Species | denotes | patients | Tax:9606 |
| 108 | 1308-1318 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
| 109 | 952-960 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 110 | 985-1012 | Disease | denotes | cerebrovascular pathologies | MESH:D002561 |
| 111 | 1131-1139 | Disease | denotes | COVID-19 | MESH:C000657245 |
| 112 | 1205-1232 | Disease | denotes | cerebrovascular pathologies | MESH:D002561 |
| 113 | 1360-1393 | Disease | denotes | acute cerebrovascular pathologies | MESH:D020521 |
| 114 | 1466-1490 | Disease | denotes | vessel occlusion strokes | MESH:D020521 |
| 115 | 1509-1517 | Disease | denotes | COVID-19 | MESH:C000657245 |
2_test
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| 32501751-32197103-53715174 | 294-295 | 32197103 | denotes | 1 |
| 32501751-32343504-53715175 | 571-572 | 32343504 | denotes | 4 |
| 32501751-32310015-53715176 | 693-694 | 32310015 | denotes | 6 |
| T10510 | 294-295 | 32197103 | denotes | 1 |
| T30034 | 571-572 | 32343504 | denotes | 4 |
| T14177 | 693-694 | 32310015 | denotes | 6 |