PMC:7519301 / 9249-9989 JSONTXT

{"project":"LitCovid-PD-FMA-UBERON","denotations":[{"id":"T34","span":{"begin":35,"end":42},"obj":"Body_part"},{"id":"T35","span":{"begin":184,"end":190},"obj":"Body_part"},{"id":"T36","span":{"begin":376,"end":384},"obj":"Body_part"},{"id":"T37","span":{"begin":413,"end":421},"obj":"Body_part"},{"id":"T38","span":{"begin":505,"end":511},"obj":"Body_part"}],"attributes":[{"id":"A34","pred":"fma_id","subj":"T34","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A35","pred":"fma_id","subj":"T35","obj":"http://purl.org/sig/ont/fma/fma84116"},{"id":"A36","pred":"fma_id","subj":"T36","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A37","pred":"fma_id","subj":"T37","obj":"http://purl.org/sig/ont/fma/fma67257"},{"id":"A38","pred":"fma_id","subj":"T38","obj":"http://purl.org/sig/ont/fma/fma84116"}],"text":"SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. The scale indicates the distance corresponding to one substitution. Lineages are labeled following PANGOLIN (22)."}

{"project":"LitCovid-PD-UBERON","denotations":[{"id":"T2","span":{"begin":631,"end":636},"obj":"Body_part"}],"attributes":[{"id":"A2","pred":"uberon_id","subj":"T2","obj":"http://purl.obolibrary.org/obo/UBERON_0002542"}],"text":"SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. The scale indicates the distance corresponding to one substitution. Lineages are labeled following PANGOLIN (22)."}

{"project":"LitCovid-PD-MONDO","denotations":[{"id":"T82","span":{"begin":0,"end":8},"obj":"Disease"},{"id":"T83","span":{"begin":0,"end":4},"obj":"Disease"}],"attributes":[{"id":"A82","pred":"mondo_id","subj":"T82","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"},{"id":"A83","pred":"mondo_id","subj":"T83","obj":"http://purl.obolibrary.org/obo/MONDO_0005091"}],"text":"SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. The scale indicates the distance corresponding to one substitution. Lineages are labeled following PANGOLIN (22)."}

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T88","span":{"begin":45,"end":46},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"},{"id":"T89","span":{"begin":119,"end":120},"obj":"http://purl.obolibrary.org/obo/CLO_0001021"},{"id":"T90","span":{"begin":708,"end":715},"obj":"http://purl.obolibrary.org/obo/CLO_0007225"},{"id":"T91","span":{"begin":736,"end":738},"obj":"http://purl.obolibrary.org/obo/CLO_0050507"}],"text":"SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. The scale indicates the distance corresponding to one substitution. Lineages are labeled following PANGOLIN (22)."}

{"project":"LitCovid-PD-CHEBI","denotations":[{"id":"T28","span":{"begin":376,"end":384},"obj":"Chemical"},{"id":"T29","span":{"begin":413,"end":421},"obj":"Chemical"}],"attributes":[{"id":"A28","pred":"chebi_id","subj":"T28","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"},{"id":"A29","pred":"chebi_id","subj":"T29","obj":"http://purl.obolibrary.org/obo/CHEBI_36080"}],"text":"SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. The scale indicates the distance corresponding to one substitution. Lineages are labeled following PANGOLIN (22)."}

{"project":"LitCovid-PubTator","denotations":[{"id":"192","span":{"begin":443,"end":444},"obj":"Gene"},{"id":"193","span":{"begin":453,"end":454},"obj":"Gene"},{"id":"194","span":{"begin":423,"end":424},"obj":"Gene"},{"id":"195","span":{"begin":0,"end":10},"obj":"Species"}],"attributes":[{"id":"A192","pred":"tao:has_database_id","subj":"192","obj":"Gene:43740571"},{"id":"A193","pred":"tao:has_database_id","subj":"193","obj":"Gene:43740575"},{"id":"A194","pred":"tao:has_database_id","subj":"194","obj":"Gene:43740568"},{"id":"A195","pred":"tao:has_database_id","subj":"195","obj":"Tax:2697049"}],"namespaces":[{"prefix":"Tax","uri":"https://www.ncbi.nlm.nih.gov/taxonomy/"},{"prefix":"MESH","uri":"https://id.nlm.nih.gov/mesh/"},{"prefix":"Gene","uri":"https://www.ncbi.nlm.nih.gov/gene/"},{"prefix":"CVCL","uri":"https://web.expasy.org/cellosaurus/CVCL_"}],"text":"SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. The scale indicates the distance corresponding to one substitution. Lineages are labeled following PANGOLIN (22)."}

{"project":"LitCovid-sentences","denotations":[{"id":"T61","span":{"begin":0,"end":191},"obj":"Sentence"},{"id":"T62","span":{"begin":192,"end":334},"obj":"Sentence"},{"id":"T63","span":{"begin":335,"end":522},"obj":"Sentence"},{"id":"T64","span":{"begin":523,"end":626},"obj":"Sentence"},{"id":"T65","span":{"begin":627,"end":694},"obj":"Sentence"},{"id":"T66","span":{"begin":695,"end":740},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. The scale indicates the distance corresponding to one substitution. Lineages are labeled following PANGOLIN (22)."}