PMC:7519301 / 9249-9989
Annnotations
LitCovid-PD-FMA-UBERON
| Id | Subject | Object | Predicate | Lexical cue | fma_id |
|---|---|---|---|---|---|
| T34 | 35-42 | Body_part | denotes | genomes | http://purl.org/sig/ont/fma/fma84116 |
| T35 | 184-190 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
| T36 | 376-384 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T37 | 413-421 | Body_part | denotes | proteins | http://purl.org/sig/ont/fma/fma67257 |
| T38 | 505-511 | Body_part | denotes | genome | http://purl.org/sig/ont/fma/fma84116 |
LitCovid-PD-UBERON
| Id | Subject | Object | Predicate | Lexical cue | uberon_id |
|---|---|---|---|---|---|
| T2 | 631-636 | Body_part | denotes | scale | http://purl.obolibrary.org/obo/UBERON_0002542 |
LitCovid-PD-MONDO
| Id | Subject | Object | Predicate | Lexical cue | mondo_id |
|---|---|---|---|---|---|
| T82 | 0-8 | Disease | denotes | SARS-CoV | http://purl.obolibrary.org/obo/MONDO_0005091 |
| T83 | 0-4 | Disease | denotes | SARS | http://purl.obolibrary.org/obo/MONDO_0005091 |
LitCovid-PD-CLO
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T88 | 45-46 | http://purl.obolibrary.org/obo/CLO_0001020 | denotes | A |
| T89 | 119-120 | http://purl.obolibrary.org/obo/CLO_0001021 | denotes | B |
| T90 | 708-715 | http://purl.obolibrary.org/obo/CLO_0007225 | denotes | labeled |
| T91 | 736-738 | http://purl.obolibrary.org/obo/CLO_0050507 | denotes | 22 |
LitCovid-PD-CHEBI
| Id | Subject | Object | Predicate | Lexical cue | chebi_id |
|---|---|---|---|---|---|
| T28 | 376-384 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
| T29 | 413-421 | Chemical | denotes | proteins | http://purl.obolibrary.org/obo/CHEBI_36080 |
LitCovid-PubTator
| Id | Subject | Object | Predicate | Lexical cue | tao:has_database_id |
|---|---|---|---|---|---|
| 192 | 443-444 | Gene | denotes | M | Gene:43740571 |
| 193 | 453-454 | Gene | denotes | N | Gene:43740575 |
| 194 | 423-424 | Gene | denotes | S | Gene:43740568 |
| 195 | 0-10 | Species | denotes | SARS-CoV-2 | Tax:2697049 |
LitCovid-sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T61 | 0-191 | Sentence | denotes | SARS-CoV-2 diversity across 18,514 genomes. (A) Distribution representing the location and date of sample collection. (B) Location and frequency of sites with polymorphisms across the genome. |
| T62 | 192-334 | Sentence | denotes | Proportion of sequences that showed polymorphisms compared to the reference sequence, Wuhan-Hu-1 (GISAID: EPI_ISL_402215, GenBank: NC_045512). |
| T63 | 335-522 | Sentence | denotes | ORFs are shown in gray for nonstructural proteins and in color for structural proteins (S, purple; E, blue; M, green; N, red). (C) Global phylogeny of 18,514 independent genome sequences. |
| T64 | 523-626 | Sentence | denotes | The tree was rooted at the reference sequence, Wuhan-Hu-1, and tips are colored by collection location. |
| T65 | 627-694 | Sentence | denotes | The scale indicates the distance corresponding to one substitution. |
| T66 | 695-740 | Sentence | denotes | Lineages are labeled following PANGOLIN (22). |