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PMC:7519301 / 46832-47592 JSONTXT

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LitCovid-PD-FMA-UBERON

Id Subject Object Predicate Lexical cue fma_id
T147 2-6 Body_part denotes Cell http://purl.org/sig/ont/fma/fma68646
T148 139-142 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T149 260-267 Body_part denotes protein http://purl.org/sig/ont/fma/fma67257
T150 352-355 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T151 364-367 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T152 377-380 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T153 384-387 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T154 395-398 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T155 467-470 Body_part denotes hla http://purl.org/sig/ont/fma/fma84795
T156 527-530 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T157 540-543 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T158 567-570 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T159 577-580 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T160 596-599 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795
T161 664-667 Body_part denotes MHC http://purl.org/sig/ont/fma/fma84079
T162 738-741 Body_part denotes HLA http://purl.org/sig/ont/fma/fma84795

LitCovid-PD-CLO

Id Subject Object Predicate Lexical cue
T354 0-6 http://purl.obolibrary.org/obo/CL_0000084 denotes T Cell
T355 46-47 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T356 242-243 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T357 258-259 http://purl.obolibrary.org/obo/CLO_0001020 denotes a
T358 381-382 http://purl.obolibrary.org/obo/CLO_0001020 denotes A
T359 388-389 http://purl.obolibrary.org/obo/CLO_0001021 denotes B

LitCovid-PD-CHEBI

Id Subject Object Predicate Lexical cue chebi_id
T129 58-65 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T130 195-202 Chemical denotes epitope http://purl.obolibrary.org/obo/CHEBI_53000
T131 260-267 Chemical denotes protein http://purl.obolibrary.org/obo/CHEBI_36080
T132 537-539 Chemical denotes II http://purl.obolibrary.org/obo/CHEBI_74067

LitCovid-PubTator

Id Subject Object Predicate Lexical cue tao:has_database_id
596 377-382 Gene denotes HLA-A Gene:3105
597 384-389 Gene denotes HLA-B Gene:3106
598 567-575 Gene denotes HLA-DQB1 Gene:3119
599 577-585 Gene denotes HLA-DPA1 Gene:3113
600 586-590 Gene denotes DPB1 Gene:3115
601 596-604 Gene denotes HLA-DQA1 Gene:3117
602 664-667 Gene denotes MHC Gene:3107
603 527-530 Gene denotes MHC Gene:3107
604 352-355 Gene denotes MHC Gene:3107
605 738-741 Gene denotes HLA Gene:3113
606 540-543 Gene denotes HLA Gene:3113
607 467-470 Gene denotes hla Gene:3113
608 395-398 Gene denotes HLA Gene:3113
609 364-367 Gene denotes HLA Gene:3113

LitCovid-sentences

Id Subject Object Predicate Lexical cue
T294 0-28 Sentence denotes T Cell Immunogenicity Index.
T295 29-269 Sentence denotes For each site in a predicted epitope, the immunogenicity index was defined as the sum of the frequency of the HLA alleles or haplotypes restricting the corresponding epitope (multiple epitopes can be predicted at a given site in a protein).
T296 270-610 Sentence denotes Total frequencies from CIWD 3.0 were used as the frequencies of the corresponding MHC class I HLA alleles (HLA-A, HLA-B, and HLA-C), and the global frequencies from http://17ihiw.org/17th-ihiw-ngs-hla-data/ were used as the frequencies of the corresponding MHC class II HLA alleles or haplotypes (HLA-DQB1, HLA-DPA1-DPB1, and HLA-DQA1-DPB).
T297 611-760 Sentence denotes This procedure was repeated using the frequencies of MHC alleles or haplotypes in different subpopulations listed in the above HLA frequency dataset.