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{"target":"https://pubannotation.org/docs/sourcedb/PMC/sourceid/7519301","sourcedb":"PMC","sourceid":"7519301","source_url":"https://www.ncbi.nlm.nih.gov/pmc/7519301","text":"For each pair of sequences, we calculated the Hamming distance as the number of sites that are different after removing sites with ambiguities and/or gaps. For computational efficiency, given the size of the alignment, this was implemented in parallel in C++, using Bazel (https://bazel.build/) to build on a Linux system. This implementation is available to download at https://www.hivresearch.org/publication-supplements.","tracks":[{"project":"LitCovid-PD-CLO","denotations":[{"id":"T285","span":{"begin":307,"end":308},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"attributes":[{"subj":"T285","pred":"source","obj":"LitCovid-PD-CLO"}]},{"project":"LitCovid-sentences","denotations":[{"id":"T231","span":{"begin":0,"end":155},"obj":"Sentence"},{"id":"T232","span":{"begin":156,"end":322},"obj":"Sentence"},{"id":"T233","span":{"begin":323,"end":423},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"attributes":[{"subj":"T231","pred":"source","obj":"LitCovid-sentences"},{"subj":"T232","pred":"source","obj":"LitCovid-sentences"},{"subj":"T233","pred":"source","obj":"LitCovid-sentences"}]}],"config":{"attribute types":[{"pred":"source","value type":"selection","values":[{"id":"LitCovid-PD-CLO","color":"#93c1ec","default":true},{"id":"LitCovid-sentences","color":"#dbec93"}]}]}}