PMC:7519301 / 37881-38304 JSONTXT

{"project":"LitCovid-PD-CLO","denotations":[{"id":"T285","span":{"begin":307,"end":308},"obj":"http://purl.obolibrary.org/obo/CLO_0001020"}],"text":"For each pair of sequences, we calculated the Hamming distance as the number of sites that are different after removing sites with ambiguities and/or gaps. For computational efficiency, given the size of the alignment, this was implemented in parallel in C++, using Bazel (https://bazel.build/) to build on a Linux system. This implementation is available to download at https://www.hivresearch.org/publication-supplements."}

{"project":"LitCovid-sentences","denotations":[{"id":"T231","span":{"begin":0,"end":155},"obj":"Sentence"},{"id":"T232","span":{"begin":156,"end":322},"obj":"Sentence"},{"id":"T233","span":{"begin":323,"end":423},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"For each pair of sequences, we calculated the Hamming distance as the number of sites that are different after removing sites with ambiguities and/or gaps. For computational efficiency, given the size of the alignment, this was implemented in parallel in C++, using Bazel (https://bazel.build/) to build on a Linux system. This implementation is available to download at https://www.hivresearch.org/publication-supplements."}